Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30002
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55190.1 68416.m06130 esterase/lipase/thioesterase family pro...    32   0.46 
At5g36270.1 68418.m04375 dehydroascorbate reductase, putative si...    31   1.1  
At4g02570.1 68417.m00351 cullin family protein similar to cullin...    29   3.3  
At3g25680.1 68416.m03196 expressed protein                             29   3.3  
At4g01800.1 68417.m00237 preprotein translocase secA subunit, pu...    28   5.7  
At2g34210.1 68415.m04186 KOW domain-containing transcription fac...    28   7.6  
At5g11560.1 68418.m01348 PQQ enzyme repeat-containing protein co...    27   10.0 
At3g57350.1 68416.m06384 nucleoporin interacting component-relat...    27   10.0 

>At3g55190.1 68416.m06130 esterase/lipase/thioesterase family
           protein similar to monoglyceride lipase from [Homo
           sapiens] GI:14594904, [Mus musculus] GI:2632162;
           contains Interpro entry IPR000379
          Length = 319

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
 Frame = +3

Query: 285 TVFKNMLPKYTREQFSFPGVKVE-KITTDELVTFVDEYDM--DISNAMYLDATEMQNKTS 455
           T FK++ PK+ +E F+  G++ E    +  L  ++D +D+  D  ++ +   +EM + T 
Sbjct: 51  TTFKDIAPKFAKEGFAVHGIEYEGHGRSSGLSVYIDNFDLLIDDVSSHFSKISEMGDNTK 110

Query: 456 DMTFM 470
              F+
Sbjct: 111 KKRFL 115


>At5g36270.1 68418.m04375 dehydroascorbate reductase, putative
           similar to dehydroascorbate reductase {Spinacia
           oleracea} gi:10952511 gb:AF195783, PMID:11148269
          Length = 217

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
 Frame = +3

Query: 339 GVKVEKITTDELVTFVDEYDMDISN-----AMYLDATEMQNKTSDMTFMARMRRLNHH-P 500
           G+  EK     LVTF  E+    S       M+L + +  N  SDM  +  +  L+HH  
Sbjct: 80  GIIEEKYPEPSLVTFPPEFASVGSKIIGAFVMFLTSKDHANDGSDMALLDELEALDHHLK 139

Query: 501 FQVSIDVMSDKTVDAVVRIFLGPK 572
             V   V  DK    VV + L PK
Sbjct: 140 THVGPFVAGDKV--TVVDLSLAPK 161


>At4g02570.1 68417.m00351 cullin family protein similar to cullin 3
           [Homo sapiens] GI:3639052; contains Pfam profile
           PF00888: Cullin family
          Length = 738

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
 Frame = -1

Query: 329 ELFASIFREHVLENGEDVANSFHDHPEDRIAETGSVHVQG------SRHVGVLVHVVLAI 168
           E  A+IF++HV   G  +     D   +++A T SV  Q         H   +V+V    
Sbjct: 298 EPVANIFKQHVTAEGNALVQQAEDTATNQVANTASVQEQVLIRKVIELHDKYMVYVTECF 357

Query: 167 AQHFLHQVGQVDNFSIVAN 111
             H L      + F I  N
Sbjct: 358 QNHTLFHKALKEAFEIFCN 376


>At3g25680.1 68416.m03196 expressed protein
          Length = 558

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +1

Query: 277 TSSPFSRTCSRNILANSSASPESKWRKLPPMSWSHSL 387
           TSS  S   SRN L NS+ +PES   +L  ++W   L
Sbjct: 265 TSSKLSGEDSRNDLGNSNFNPESFVSRLDLVNWKAQL 301


>At4g01800.1 68417.m00237 preprotein translocase secA subunit,
            putative similar to preprotein translocase secA subunit,
            chloroplast [precursor] SP:Q9SYI0 from [Arabidopsis
            thaliana]; non-consensus GA donor splice site at exon 4
          Length = 1022

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
 Frame = +3

Query: 276  NIFTVFKNMLPKYTREQFSFPGVKVE-KITT---DELVTFVDEYDMDISNAMYLDATEMQ 443
            NIF +F     +     F    + +E K+ T   DE    V+ Y  DI   ++ +  E+ 
Sbjct: 740  NIFRIFGGDRIQGMMRAFRVEDLPIESKMLTKALDEAQRKVENYFFDIRKQLF-EFDEVL 798

Query: 444  NKTSDMTFMARMRRLNHHPFQVSIDVMSDKTVDAVVRIFLGP 569
            N   D  +  R R L     +  I   ++ T+D ++   +GP
Sbjct: 799  NSQRDRVYTERRRALVSDSLEPLIIEYAELTMDDILEANIGP 840


>At2g34210.1 68415.m04186 KOW domain-containing transcription factor
           family protein
          Length = 990

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 20/46 (43%), Positives = 25/46 (54%)
 Frame = +3

Query: 528 DKTVDAVVRIFLGPKYDCMGRLMSVNDKRLDMFELDSFMYKLVNGK 665
           D  V   V+I LGP     GRL+ V DK L   EL++   K+V GK
Sbjct: 683 DHLVGTYVKIRLGPFKGYSGRLVEVKDK-LVRVELEA---KIVTGK 724


>At5g11560.1 68418.m01348 PQQ enzyme repeat-containing protein
           contains Pfam profile PF01011: PQQ enzyme repeat
          Length = 978

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +2

Query: 188 QVHLRADFLGHVHYLSPRSCLLDDHETSLQHLHRFQEHAPEIYSRTVQLPRSQSGE 355
           ++HL AD +GHVH     S  L   +   Q+++ +   A +   R   +  S SGE
Sbjct: 594 RLHLIADTVGHVHLYPKTSEALSIFQREFQNVYWYTVEADDGIIRGHVMKGSCSGE 649


>At3g57350.1 68416.m06384 nucleoporin interacting component-related
           contains weak hit to Pfam profile PF04097: Nucleoporin
           interacting component
          Length = 875

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 305 EHVLENGEDVANSFHDHPEDRIAETGSV 222
           E ++ +G D+ NS+  HP+ R   TGSV
Sbjct: 720 EGLVLSGNDILNSYKYHPDVREVLTGSV 747


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,253,827
Number of Sequences: 28952
Number of extensions: 336217
Number of successful extensions: 1080
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)