Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0026
(614 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g11890.1 68414.m01371 vesicle transport protein SEC22, putati... 98 5e-21
At5g52270.1 68418.m06487 vesicle transport protein-related simil... 59 3e-09
At2g33120.1 68415.m04060 synaptobrevin-related protein / vesicl... 53 1e-07
At2g32670.1 68415.m03994 synaptobrevin family protein similar to... 53 1e-07
At1g04750.1 68414.m00470 synaptobrevin family protein similar to... 52 3e-07
At2g25340.1 68415.m03031 synaptobrevin family protein similar to... 50 9e-07
At1g04760.1 68414.m00472 synaptobrevin family protein similar to... 50 1e-06
At5g22360.1 68418.m02609 synaptobrevin family protein similar to... 48 5e-06
At5g11150.1 68418.m01303 synaptobrevin / vesicle-associated memb... 48 5e-06
At4g15780.1 68417.m02402 synaptobrevin-related family protein si... 47 9e-06
At4g32150.1 68417.m04573 synaptobrevin family protein similar to... 47 1e-05
At3g54300.1 68416.m06001 synaptobrevin family protein similar to... 42 4e-04
At2g33110.1 68415.m04059 synaptobrevin family protein similar to... 36 0.016
At3g03750.2 68416.m00381 SET domain-containing protein low simil... 30 1.1
At3g03750.1 68416.m00380 SET domain-containing protein low simil... 30 1.1
At3g58810.2 68416.m06555 zinc transporter, putative similar to z... 27 7.5
At3g58810.1 68416.m06554 zinc transporter, putative similar to z... 27 7.5
At5g52620.1 68418.m06533 F-box family protein contains Pfam prof... 27 9.9
At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative simil... 27 9.9
>At1g11890.1 68414.m01371 vesicle transport protein SEC22, putative
identified as SEC22 by Raikhel, NV, et al. in Plant
Physiol. 124: 1558-69 (2000); similar to vesicle
trafficking protein gb|U91538 from Mus musculus; ESTs
gb|F15494 and gb|F14097 come from this gene
Length = 218
Score = 97.9 bits (233), Expect = 5e-21
Identities = 62/205 (30%), Positives = 100/205 (48%), Gaps = 2/205 (0%)
Frame = +2
Query: 5 DGLPLAATMQEDEQSACNILEYQNQAKMLFRKLS--PQSPMRCSIETGPYLFHYLIENHI 178
DGLPLA + +D + + Y+ Q K LF+ LS R S+ETGPY+FHY+IE +
Sbjct: 12 DGLPLAEGL-DDGRDLPDSDMYKQQVKALFKNLSRGQNDASRMSVETGPYVFHYIIEGRV 70
Query: 179 CYLVLCERNYSKRLAFNYLEEIAQESSNSTDTG*TP*LVXXXXXXXXXXXXXXGKQYAEX 358
CYL +C+R+Y K+LAF YLE++ E P + ++ +
Sbjct: 71 CYLTMCDRSYPKKLAFQYLEDLKNEFERVNG----PNIETAARPYAFIKFDTFIQKTKKL 126
Query: 359 XXXXXXXXXXSHLAPQLGDVQRIMMQNIDDVLQRGAILSELDTKTQNLFDMSQKYRKDAT 538
+ L +L +V +IM +N+ +VL G L ++ + L S+ Y A
Sbjct: 127 YQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAK 186
Query: 539 YLNTKSMLVKVTAGAVIVLVIVLYF 613
LN ++++ K A++ V+ L F
Sbjct: 187 DLNRQALIRKWAPVAIVFGVVFLLF 211
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 268 GHRLNTVTRPYTFIEFDTCMQ 330
G + T RPY FI+FDT +Q
Sbjct: 101 GPNIETAARPYAFIKFDTFIQ 121
>At5g52270.1 68418.m06487 vesicle transport protein-related similar
to vesicle trafficking protein sec22b [Mus musculus]
GI:1907386
Length = 214
Score = 58.8 bits (136), Expect = 3e-09
Identities = 29/86 (33%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Frame = +2
Query: 5 DGLPLAATMQE-DEQSACNILEYQNQAKMLFRKLSPQSPM--RCSIETGPYLFHYLIENH 175
DGLPLA +++ + L Y+ QA+ L +++S S + + +I + FH+L+E
Sbjct: 12 DGLPLAQDQTYVNQEDNTSFLLYKQQAEFLLKQVSKDSLLHPKMTILLDHHSFHFLVEKK 71
Query: 176 ICYLVLCERNYSKRLAFNYLEEIAQE 253
ICY+ L + +Y ++L FNYL+ + +E
Sbjct: 72 ICYIALSDSSYPRKLLFNYLQNLNKE 97
>At2g33120.1 68415.m04060 synaptobrevin-related protein /
vesicle-associated membrane protein 722 (VAMP722) (SAR1)
identical to r to Vesicle-associated membrane protein
722 (AtVAMP722) Synaptobrevin-related protein 1
(SP:P47192) {Arabidopsis thaliana}; identical to cDNA
synaptobrevin-related protein (SAR1) GI:600709
Length = 221
Score = 53.2 bits (122), Expect = 1e-07
Identities = 41/180 (22%), Positives = 78/180 (43%), Gaps = 4/180 (2%)
Frame = +2
Query: 80 AKMLFRKLSPQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQESS 259
A +KL P S + + + F+YL+EN Y V+ + +++ +LE + ++ +
Sbjct: 32 AAQCLQKL-PSSNNKFTYNCDGHTFNYLVENGFTYCVVAVDSAGRQIPMAFLERVKEDFN 90
Query: 260 NSTDTG*TP*LVXXXXXXXXXXXXXXGKQYAEXXXXXXXXXXXSHLAPQLGDVQRIMMQN 439
G QY + + Q+ +V+ +MM+N
Sbjct: 91 KRYGGGKAATAQANSLNKEFGSKLKEHMQYC--MDHPDEISKLAKVKAQVSEVKGVMMEN 148
Query: 440 IDDVLQRGAILSELDTKTQNLFDMSQKYRKDATYLNTK----SMLVKVTAGAVIVLVIVL 607
I+ VL RG + L KT+NL +Q +R T + K +M +K+ A+I+ +I++
Sbjct: 149 IEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTQMRRKMWFQNMKIKLIVLAIIIALILI 208
>At2g32670.1 68415.m03994 synaptobrevin family protein similar to
vesicle-associated membrane protein 7 [Rattus
norvegicus] GI:9502258, SP|P51809 Synaptobrevin-like
protein 1 {Homo sapiens}; contains Pfam profile PF00957:
Synaptobrevin
Length = 285
Score = 53.2 bits (122), Expect = 1e-07
Identities = 41/181 (22%), Positives = 78/181 (43%), Gaps = 5/181 (2%)
Frame = +2
Query: 80 AKMLFRKLSPQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQESS 259
A +KL P S + + + F+YL+EN Y V+ + +++ +LE + ++ +
Sbjct: 97 AAQCLQKL-PSSNNKFTYNCDGHTFNYLVENGFTYCVVAVESVGRQIPMAFLERVKEDFN 155
Query: 260 NSTDTG*TP*LVXXXXXXXXXXXXXXGKQYAEXXXXXXXXXXXSHLAPQLGDVQRIMMQN 439
G QY + + Q+ +V+ +MM+N
Sbjct: 156 KRYGGGKATTAQANSLNREFGSKLKEHMQYC--VDHPDEISKLAKVKAQVTEVKGVMMEN 213
Query: 440 IDDVLQRGAILSELDTKTQNLFDMSQKYRKDATYLNTK----SMLVK-VTAGAVIVLVIV 604
I+ VL RG + L KT+NL +Q +R T + K +M +K + G +I L+++
Sbjct: 214 IEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKIRRKMWFENMKIKLIVLGIIITLILI 273
Query: 605 L 607
+
Sbjct: 274 I 274
>At1g04750.1 68414.m00470 synaptobrevin family protein similar to
Vesicle-associated membrane protein 722 (AtVAMP722)
Synaptobrevin-related protein 1 (SP:P47192) {Arabidopsis
thaliana};
Length = 219
Score = 52.0 bits (119), Expect = 3e-07
Identities = 37/175 (21%), Positives = 74/175 (42%)
Frame = +2
Query: 80 AKMLFRKLSPQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQESS 259
A +KL P S + + + F+YL+E+ Y V+ + +++ ++LE + ++ +
Sbjct: 32 AAQCLQKL-PSSNNKFTYNCDGHTFNYLVEDGFTYCVVAVDSAGRQIPMSFLERVKEDFN 90
Query: 260 NSTDTG*TP*LVXXXXXXXXXXXXXXGKQYAEXXXXXXXXXXXSHLAPQLGDVQRIMMQN 439
G QY + + Q+ +V+ +MM+N
Sbjct: 91 KRYGGGKAATAQANSLNKEFGSKLKEHMQYC--MDHPDEISKLAKVKAQVSEVKGVMMEN 148
Query: 440 IDDVLQRGAILSELDTKTQNLFDMSQKYRKDATYLNTKSMLVKVTAGAVIVLVIV 604
I+ VL RG + L KT+NL +Q +R T + K L + +++ +I+
Sbjct: 149 IEKVLDRGEKIELLVDKTENLRSQAQDFRTTGTQMRRKMWLQNMKIKLIVLAIII 203
>At2g25340.1 68415.m03031 synaptobrevin family protein similar to
Synaptobrevin-like protein 1 (SP:P51809) [Homo sapiens]
Length = 219
Score = 50.4 bits (115), Expect = 9e-07
Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 2/179 (1%)
Frame = +2
Query: 80 AKMLFRKLSPQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQESS 259
AK + K+ S Y+FH + + L + + + +R+ F++LE+I Q
Sbjct: 29 AKQILEKIPGNGDSHVSYSQDRYVFHVKRTDGLTVLCMADEDAGRRIPFSFLEDIHQRFV 88
Query: 260 NSTDTG*TP*LVXXXXXXXXXXXXXXGKQYAEXXXXXXXXXXXSHLAPQLGDVQRIMMQN 439
+ + Q E S + ++ V+ +M++N
Sbjct: 89 RTYGRA----IHSAQAYAMNDEFSRVLNQQIEYYSNDPNADTISRIKGEMNQVRDVMIEN 144
Query: 440 IDDVLQRGAILSELDTKTQNLFDMSQKYRKDATYLNTKSML--VKVTAGAVIVLVIVLY 610
ID++L RG L L KT N+ + ++RK N K+T ++VL++++Y
Sbjct: 145 IDNILDRGERLELLVDKTANMQGNTFRFRKQTRRFNNTVWWRNCKLTLLLILVLLVIIY 203
>At1g04760.1 68414.m00472 synaptobrevin family protein similar to
Vesicle-associated membrane protein 722 (AtVAMP722)
Synaptobrevin-related protein 1 (SP:P47192) {Arabidopsis
thaliana}
Length = 220
Score = 50.0 bits (114), Expect = 1e-06
Identities = 41/184 (22%), Positives = 78/184 (42%), Gaps = 4/184 (2%)
Frame = +2
Query: 68 YQNQAKMLFRKLSPQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIA 247
+ + A +KL P S + + + F+YL +N Y V+ + +++ +LE +
Sbjct: 28 FTSVAAQCLQKL-PSSNNKFTYNCDGHTFNYLADNGFTYCVVVIESAGRQIPMAFLERVK 86
Query: 248 QESSNSTDTG*TP*LVXXXXXXXXXXXXXXGKQYAEXXXXXXXXXXXSHLAPQLGDVQRI 427
++ + G QY S + Q+ +V+ +
Sbjct: 87 EDFNKRYGGGKASTAKANSLNKEFGSKLKEHMQYCADHPEEISKL--SKVKAQVTEVKGV 144
Query: 428 MMQNIDDVLQRGAILSELDTKTQNLFDMSQKYRKDATYLNTK----SMLVKVTAGAVIVL 595
MM+NI+ VL RG + L KT+NL +Q +R T + K +M +K+ +IV
Sbjct: 145 MMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKMKRKLWFENMKIKLIVFGIIVA 204
Query: 596 VIVL 607
+I++
Sbjct: 205 LILI 208
>At5g22360.1 68418.m02609 synaptobrevin family protein similar to
Synaptobrevin-like protein 1 (SP:P51809) [Homo sapiens]
Length = 221
Score = 48.0 bits (109), Expect = 5e-06
Identities = 39/182 (21%), Positives = 76/182 (41%), Gaps = 7/182 (3%)
Frame = +2
Query: 83 KMLFRKLSPQ-SPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQESS 259
+ + KLSP+ S R Y+FH L + + +L + + +R+ F+YLEEI
Sbjct: 30 RRILEKLSPEISDERLCFSQDRYIFHILRSDGLTFLCMANDTFGRRVPFSYLEEIHMRFM 89
Query: 260 NSTDTG*TP*LVXXXXXXXXXXXXXXGKQYAEXXXXXXXXXXXSHLAPQLGDVQRIMMQN 439
+ Q E + + ++ +++ +M++N
Sbjct: 90 KNYGKV----AHNAPAYAMNDEFSRVLHQQMEFFSSNPSVDTLNRVRGEVSEIRSVMVEN 145
Query: 440 IDDVLQRGAILSELDTKTQNLFDMSQKYRKD------ATYLNTKSMLVKVTAGAVIVLVI 601
I+ +++RG + L KT + D S +RK A ++ +LV +T V +L I
Sbjct: 146 IEKIMERGDRIELLVDKTATMQDSSFHFRKQSKRLRRALWMKNAKLLVLLTCLIVFLLYI 205
Query: 602 VL 607
++
Sbjct: 206 II 207
>At5g11150.1 68418.m01303 synaptobrevin / vesicle-associated
membrane protein 713 (VAMP713) identified as AtVAMP713
by Sanderfoot, A.A., et al. in Plant Physiol. 124:
1558-69 (2000); similar to Vesicle-associated membrane
protein 722 (AtVAMP722) Synaptobrevin-related protein 1
(SP:P47192) {Arabidopsis thaliana}; synaptobrevin-like
protein Sybl1, Mus musculus, EMBL:MMU133536
Length = 221
Score = 48.0 bits (109), Expect = 5e-06
Identities = 41/180 (22%), Positives = 72/180 (40%), Gaps = 3/180 (1%)
Frame = +2
Query: 80 AKMLFRKL-SPQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQES 256
+K + KL S S Y+FH + + L + + + + F +L++I Q
Sbjct: 29 SKQILEKLPGNDSDSHMSYSQDRYIFHVKRTDGLTVLCMADETAGRNIPFAFLDDIHQRF 88
Query: 257 SNSTDTG*TP*LVXXXXXXXXXXXXXXGKQYAEXXXXXXXXXXXSHLAPQLGDVQRIMMQ 436
+ + Q E S + ++ V+ +M++
Sbjct: 89 VKTYGRA----IHSAQAYSMNDEFSRVLSQQMEFYSNDPNADRMSRIKGEMSQVRNVMIE 144
Query: 437 NIDDVLQRGAILSELDTKTQNLFDMSQKYRKDATYLNTKSML--VKVTAGAVIVLVIVLY 610
NID VL RG L L KT+N+ + ++RK A T VK+T ++VL +V+Y
Sbjct: 145 NIDKVLDRGERLELLVDKTENMQGNTFRFRKQARRYRTIMWWRNVKLTIALILVLALVVY 204
>At4g15780.1 68417.m02402 synaptobrevin-related family protein
similar to Vesicle-associated membrane protein 722
(AtVAMP722) Synaptobrevin-related protein 1 (SP:P47192)
{Arabidopsis thaliana}
Length = 194
Score = 47.2 bits (107), Expect = 9e-06
Identities = 32/150 (21%), Positives = 63/150 (42%)
Frame = +2
Query: 80 AKMLFRKLSPQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQESS 259
A +KL S + + + F++L+E+ Y V+ + + SK+++ +LE + +
Sbjct: 32 AAQCLQKLPSSSNSKFTYNCDHHTFNFLVEDAYAYCVVAKDSLSKQISIAFLERVKADFK 91
Query: 260 NSTDTG*TP*LVXXXXXXXXXXXXXXGKQYAEXXXXXXXXXXXSHLAPQLGDVQRIMMQN 439
G + Y + Q+ +V+ IM++N
Sbjct: 92 KRYGGGKASTAIAKSLNKEFGPVMKEHMNYIVDHAEEIEKLIK--VKAQVSEVKSIMLEN 149
Query: 440 IDDVLQRGAILSELDTKTQNLFDMSQKYRK 529
ID + RG L+ L KT+NL +++Y+K
Sbjct: 150 IDKAIDRGENLTVLTDKTENLRSQAREYKK 179
>At4g32150.1 68417.m04573 synaptobrevin family protein similar to
Synaptobrevin-like protein 1 (SP:P51809) [Homo sapiens]
Length = 219
Score = 46.8 bits (106), Expect = 1e-05
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 2/179 (1%)
Frame = +2
Query: 80 AKMLFRKLSPQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQESS 259
AK + K+ + S Y+FH + + L + E +R+ F +LE+I Q
Sbjct: 29 AKQILEKVPGDNDSNVSYSQDRYVFHVKRTDGLTVLCMAEETAGRRIPFAFLEDIHQRFV 88
Query: 260 NSTDTG*TP*LVXXXXXXXXXXXXXXGKQYAEXXXXXXXXXXXSHLAPQLGDVQRIMMQN 439
+ L Q + + + ++ V+ +M++N
Sbjct: 89 RTYGRAVHTALAYAMNEEFSRVL----SQQIDYYSNDPNADRINRIKGEMNQVRGVMIEN 144
Query: 440 IDDVLQRGAILSELDTKTQNLFDMSQKYRKDATYL--NTKSMLVKVTAGAVIVLVIVLY 610
ID VL RG L L KT N+ + ++RK A N K+T +++L++++Y
Sbjct: 145 IDKVLDRGERLELLVDKTANMQGNTFRFRKQARRFRSNVWWRNCKLTVLLILLLLVIIY 203
>At3g54300.1 68416.m06001 synaptobrevin family protein similar to
vesicle-associated membrane protein 7B (At VAMP7B),
Arabidopsis thaliana, EMBL:AF025333
Length = 240
Score = 41.5 bits (93), Expect = 4e-04
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Frame = +2
Query: 389 SHLAPQLGDVQRIMMQNIDDVLQRGAILSELDTKTQNLFDMSQKYRKDATYLNTK----S 556
S L Q+ +V+ IMM NI+ VL RG + L KT+NL + +++ L K S
Sbjct: 151 SKLKAQITEVKGIMMDNIEKVLDRGEKIELLVDKTENLQFQADSFQRQGRQLRRKMWLQS 210
Query: 557 MLVK-VTAGAVIVLVIVLY 610
+ +K + AGAV +++++
Sbjct: 211 LQMKLMVAGAVFSFILIVW 229
>At2g33110.1 68415.m04059 synaptobrevin family protein similar to
Vesicle-associated membrane protein 722 (AtVAMP722)
Synaptobrevin-related protein 1 (SP:P47192) {Arabidopsis
thaliana}
Length = 217
Score = 36.3 bits (80), Expect = 0.016
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = +2
Query: 404 QLGDVQRIMMQNIDDVLQRGAI---LSELDTKTQNLFDMSQKYRKDATYLNTKSMLVKVT 574
Q+ +V+ +MM+NI+ VL RG I L +++ Q + + ++ + N K L+ +
Sbjct: 137 QVSEVKSLMMENIEKVLARGVICEMLGSSESQPQAFYIKRTQMKRKKWFQNMKIKLIVLA 196
Query: 575 AGAVIVLVIVL 607
++L+I+L
Sbjct: 197 IIIALILIIIL 207
>At3g03750.2 68416.m00381 SET domain-containing protein low
similarity to G9a [Homo sapiens] GI:287865; contains
Pfam profiles PF00856: SET domain, PF05033: Pre-SET
motif
Length = 354
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 161 LIENHICYLVLCERNYSKRLAFNYLEEIAQESSNSTDTG 277
L++ C CE Y K LAF +EEIA E + G
Sbjct: 139 LVDESGCECERCEEGYCKCLAFAGMEEIANECGSGCGCG 177
>At3g03750.1 68416.m00380 SET domain-containing protein low
similarity to G9a [Homo sapiens] GI:287865; contains
Pfam profiles PF00856: SET domain, PF05033: Pre-SET
motif
Length = 338
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 161 LIENHICYLVLCERNYSKRLAFNYLEEIAQESSNSTDTG 277
L++ C CE Y K LAF +EEIA E + G
Sbjct: 139 LVDESGCECERCEEGYCKCLAFAGMEEIANECGSGCGCG 177
>At3g58810.2 68416.m06555 zinc transporter, putative similar to zinc
transporter 4; ZnT4 [Mus musculus]
gi|2582990|gb|AAB82593; similar to zinc transporter ZAT
[Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of
the cation diffusion facilitator (CDF) family, or cation
efflux (CE) family, PMID:11500563
Length = 393
Score = 27.5 bits (58), Expect = 7.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 604 HNHEHDNGSGGHLHQH 557
H H HDNG GH H H
Sbjct: 204 HGHSHDNGH-GHSHDH 218
>At3g58810.1 68416.m06554 zinc transporter, putative similar to zinc
transporter 4; ZnT4 [Mus musculus]
gi|2582990|gb|AAB82593; similar to zinc transporter ZAT
[Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of
the cation diffusion facilitator (CDF) family, or cation
efflux (CE) family, PMID:11500563
Length = 432
Score = 27.5 bits (58), Expect = 7.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 604 HNHEHDNGSGGHLHQH 557
H H HDNG GH H H
Sbjct: 243 HGHSHDNGH-GHSHDH 257
>At5g52620.1 68418.m06533 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 375
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +3
Query: 459 GELYCPNWTRRRKTYSICRRSTGRTPRISTRS 554
G LY PN TR + IC STG+ R++ RS
Sbjct: 112 GLLYFPN-TRTGEVPVICNPSTGQYARLTQRS 142
>At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative similar
to SP|Q9ULA0 Aspartyl aminopeptidase (EC 3.4.11.21)
{Homo sapiens}; contains Pfam profile PF02127:
Aminopeptidase I zinc metalloprotease (M18)
Length = 526
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = -3
Query: 417 TSPSC--GARCEXXXXXXXXXXPSAYCLPRALHARVELYERVRTSHGVQPVSV 265
T PSC GA E S++C RAL E E + T H ++ +++
Sbjct: 291 TQPSCLGGANNEFIFSGRLDNLASSFCALRALIDSCESSENLSTEHDIRMIAL 343
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,094,393
Number of Sequences: 28952
Number of extensions: 203672
Number of successful extensions: 698
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -