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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0023
         (765 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso...   146   1e-35
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)             146   1e-35
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai...   146   1e-35
At4g10710.1 68417.m01751 transcriptional regulator-related simil...    31   0.84 
At1g29760.1 68414.m03639 expressed protein                             31   0.84 
At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase, ...    29   3.4  

>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
           protein S4, Arabidopsis thaliana, PIR:T48480
          Length = 262

 Score =  146 bits (355), Expect = 1e-35
 Identities = 66/85 (77%), Positives = 75/85 (88%)
 Frame = +1

Query: 1   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
           HLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  EV+ I+ Q
Sbjct: 8   HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQ 67

Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSM 255
           R I+VDGKVRTD TYPAGFMDVVS+
Sbjct: 68  RHIQVDGKVRTDKTYPAGFMDVVSI 92



 Score =  126 bits (305), Expect = 1e-29
 Identities = 56/88 (63%), Positives = 69/88 (78%)
 Frame = +3

Query: 258 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 437
           KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +  G K +PYL T+DGRTIRYPDPL
Sbjct: 94  KTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPL 153

Query: 438 IKVNDSIQLDIATTKIMDFIKFESGTCV 521
           IK ND+I+LD+   KI++FIKF+ G  V
Sbjct: 154 IKPNDTIKLDLEANKIVEFIKFDVGNVV 181



 Score =  102 bits (244), Expect = 3e-22
 Identities = 48/86 (55%), Positives = 62/86 (72%)
 Frame = +2

Query: 506 VGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKARRRNI 685
           VGN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGK  +  +
Sbjct: 177 VGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWV 236

Query: 686 SLPRGKGXXXXXXXXERDKRIRSQRS 763
           SLP+GKG         R KR+ SQ++
Sbjct: 237 SLPKGKGIKLTIIEEAR-KRLASQQA 261


>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
          Length = 262

 Score =  146 bits (355), Expect = 1e-35
 Identities = 66/85 (77%), Positives = 75/85 (88%)
 Frame = +1

Query: 1   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
           HLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  EV+ I+ Q
Sbjct: 8   HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQ 67

Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSM 255
           R I+VDGKVRTD TYPAGFMDVVS+
Sbjct: 68  RHIQVDGKVRTDKTYPAGFMDVVSI 92



 Score =  126 bits (304), Expect = 2e-29
 Identities = 56/88 (63%), Positives = 69/88 (78%)
 Frame = +3

Query: 258 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 437
           KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +  G K +PYL T+DGRTIRYPDPL
Sbjct: 94  KTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPL 153

Query: 438 IKVNDSIQLDIATTKIMDFIKFESGTCV 521
           IK ND+I+LD+   KI++FIKF+ G  V
Sbjct: 154 IKPNDTIKLDLEENKIVEFIKFDVGNVV 181



 Score =  102 bits (244), Expect = 3e-22
 Identities = 48/86 (55%), Positives = 62/86 (72%)
 Frame = +2

Query: 506 VGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKARRRNI 685
           VGN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGK  +  +
Sbjct: 177 VGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWV 236

Query: 686 SLPRGKGXXXXXXXXERDKRIRSQRS 763
           SLP+GKG         R KR+ SQ++
Sbjct: 237 SLPKGKGIKLTIIEEAR-KRLASQQA 261


>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
           ribosomal protein S4 signature from residues 8 to 22
          Length = 261

 Score =  146 bits (355), Expect = 1e-35
 Identities = 66/85 (77%), Positives = 75/85 (88%)
 Frame = +1

Query: 1   HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
           HLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  EV+ I+ Q
Sbjct: 8   HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQ 67

Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSM 255
           R I+VDGKVRTD TYPAGFMDVVS+
Sbjct: 68  RHIQVDGKVRTDKTYPAGFMDVVSI 92



 Score =  126 bits (304), Expect = 2e-29
 Identities = 56/88 (63%), Positives = 69/88 (78%)
 Frame = +3

Query: 258 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 437
           KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +  G K +PYL T+DGRTIRYPDPL
Sbjct: 94  KTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPL 153

Query: 438 IKVNDSIQLDIATTKIMDFIKFESGTCV 521
           IK ND+I+LD+   KI++FIKF+ G  V
Sbjct: 154 IKPNDTIKLDLEENKIVEFIKFDVGNVV 181



 Score =  101 bits (241), Expect = 7e-22
 Identities = 47/86 (54%), Positives = 62/86 (72%)
 Frame = +2

Query: 506 VGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKARRRNI 685
           VGN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGK  +  +
Sbjct: 177 VGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWV 236

Query: 686 SLPRGKGXXXXXXXXERDKRIRSQRS 763
           SLP+GKG         R KR+ +Q++
Sbjct: 237 SLPKGKGIKLTIIEEAR-KRLSAQQA 261


>At4g10710.1 68417.m01751 transcriptional regulator-related similar
           to chromatin-specific transcription elongation factor
           FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
          Length = 1074

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 104 KHSRNLWGPVDGLGAYTPPSLSNIHAL 24
           KHS +LWG  D L   TPP+  ++  L
Sbjct: 44  KHSADLWGSADALAIATPPASDDLRYL 70


>At1g29760.1 68414.m03639 expressed protein
          Length = 526

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 215 SVLTFPSTFMRRCFTIFRTSFPVKAYFRRFL 123
           S+LTFP   +R CF  F   F    + RRFL
Sbjct: 195 SLLTFPPWLLRNCFLFFFDPFSTIRFGRRFL 225


>At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase,
           putative / steroid 5-alpha-reductase, putative identical
           to gi:1280611; contains a steroid 5-alpha reductase,
           C-terminal domain
          Length = 262

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 194 TFMRRCFTIFRTSFPVKAYFRRFLRKITRGKHSRNLWGP 78
           TF R C      + P  A   +FL+    GKH+R  WGP
Sbjct: 8   TFFRYCLLTLIFAGPPTAVLLKFLQA-PYGKHNRTGWGP 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,591,455
Number of Sequences: 28952
Number of extensions: 390545
Number of successful extensions: 1173
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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