Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0008
         (569 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   127   6e-30
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   124   4e-29
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   124   4e-29
At2g22340.1 68415.m02651 hypothetical protein                          33   0.18 
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    30   0.95 
At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   0.95 
At3g54570.1 68416.m06038 calmodulin-binding protein-related cont...    28   3.8  
At3g45620.1 68416.m04927 transducin family protein / WD-40 repea...    28   5.0  
At3g16160.1 68416.m02040 tesmin/TSO1-like CXC domain-containing ...    28   5.0  
At3g24810.1 68416.m03113 kip-related protein 5 (KRP5) / cyclin-d...    27   6.7  
At2g42180.1 68415.m05220 expressed protein                             27   6.7  
At4g26490.1 68417.m03812 expressed protein                             27   8.8  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  127 bits (306), Expect = 6e-30
 Identities = 57/85 (67%), Positives = 67/85 (78%)
 Frame = +3

Query: 255 ENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPA 434
           ENP D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP 
Sbjct: 73  ENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPR 132

Query: 435 QDHQPITEASYVNIPVIALCNTDSP 509
            DHQPI E +  NIP+IA C+TDSP
Sbjct: 133 TDHQPIKEGALGNIPIIAFCDTDSP 157



 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 28/50 (56%), Positives = 35/50 (70%)
 Frame = +1

Query: 73  LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 222
           L+  E DV  M AA  HLG +N N+QME YV+KRR DG ++ NL +TWEK
Sbjct: 12  LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEK 61



 Score = 35.5 bits (78), Expect = 0.025
 Identities = 14/20 (70%), Positives = 15/20 (75%)
 Frame = +2

Query: 506 PLRFVDIAIPCNTKSSHSIG 565
           P+RFVDI IP N K  HSIG
Sbjct: 157 PMRFVDIGIPANNKGKHSIG 176


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  124 bits (299), Expect = 4e-29
 Identities = 56/85 (65%), Positives = 65/85 (76%)
 Frame = +3

Query: 255 ENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPA 434
           ENP D+ V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP 
Sbjct: 74  ENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPR 133

Query: 435 QDHQPITEASYVNIPVIALCNTDSP 509
            DHQPI E +  NIP IA C+TDSP
Sbjct: 134 TDHQPIKEGALGNIPTIAFCDTDSP 158



 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 26/46 (56%), Positives = 35/46 (76%)
 Frame = +1

Query: 85  EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 222
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+K
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDK 62



 Score = 32.7 bits (71), Expect = 0.18
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +2

Query: 506 PLRFVDIAIPCNTKSSHSIG 565
           P+ FVDI IP N K  HSIG
Sbjct: 158 PMGFVDIGIPANNKGKHSIG 177


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  124 bits (299), Expect = 4e-29
 Identities = 56/85 (65%), Positives = 65/85 (76%)
 Frame = +3

Query: 255 ENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPA 434
           ENP D+ V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP 
Sbjct: 74  ENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPR 133

Query: 435 QDHQPITEASYVNIPVIALCNTDSP 509
            DHQPI E +  NIP IA C+TDSP
Sbjct: 134 TDHQPIKEGALGNIPTIAFCDTDSP 158



 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 26/46 (56%), Positives = 35/46 (76%)
 Frame = +1

Query: 85  EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 222
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+K
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDK 62



 Score = 32.7 bits (71), Expect = 0.18
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +2

Query: 506 PLRFVDIAIPCNTKSSHSIG 565
           P+ FVDI IP N K  HSIG
Sbjct: 158 PMGFVDIGIPANNKGKHSIG 177


>At2g22340.1 68415.m02651 hypothetical protein
          Length = 358

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 123 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 242
           SW     LP+GD  +Q  C WY   +  S +G+  +   C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = +3

Query: 405 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSP*DLWTLLSHATPS 548
           P  ++V D  +    I EAS + IPV+A+ + + P + +  +++  P+
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPA 178


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +3

Query: 360 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA---SYVNIPVIALCNTDSP*DLWTLL 530
           TP   TNQ++ A  E     +LDP     PI EA   + + +    L   D P DL T++
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEALILAKIGLQCAELRRKDRP-DLGTVV 678


>At3g54570.1 68416.m06038 calmodulin-binding protein-related
           contains similarity to potato calmodulin-binding protein
           PCBP GI:17933110 from [Solanum tuberosum]
          Length = 417

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 559 RVGRLGVAWDSNVHKS*GESVL 494
           R GR+G  WD+NVH++   S+L
Sbjct: 107 RSGRIGRCWDANVHRATCSSLL 128


>At3g45620.1 68416.m04927 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats;  similar to
           PC326 protein  (GI:200241) (PIR2:S37694) [Mus
           musculus];Human (H326) translated mRNA - Homo sapiens,
           EMBL:HS06631
          Length = 481

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 462 SYVNIPVIALCNTDSP*DLWTLLSHATPSLP 554
           S+ +IP++A C  +    LWT +S+   SLP
Sbjct: 371 SHPHIPLLASCGIEKSVKLWTPMSNDVLSLP 401


>At3g16160.1 68416.m02040 tesmin/TSO1-like CXC domain-containing
           protein low similarity to cysteine-rich polycomb-like
           protein (cpp1) [Glycine max] GI:4218187; contains Pfam
           profile PF03638: Tesmin/TSO1-like CXC domain
          Length = 360

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +3

Query: 153 GDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHEN 260
           G  C Q+ C    CD  AS  G  C+ C C   H N
Sbjct: 68  GCRCKQSKCLKLYCDCFAS--GVVCTDCDCVDCHNN 101


>At3g24810.1 68416.m03113 kip-related protein 5 (KRP5) /
           cyclin-dependent kinase inhibitor 5 (ICK5) identical to 
           cyclin-dependent kinase inhibitor 5 (krp5) [Arabidopsis
           thaliana] GI:14422293
          Length = 189

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 383 LVSKSTWCETSRNRRSTGVRXKLQYSTLTEGP**DDEHIS 264
           L+     C+T   R S+G   KL+  T TE    D+E IS
Sbjct: 79  LIPSVNQCQTKNPRASSGPAKKLEPDTTTEEACGDNERIS 118


>At2g42180.1 68415.m05220 expressed protein
          Length = 166

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +1

Query: 274 SSSHHGPSVSVLY*SLXRTPVLRLLRDVSH-QVLLLTRSKLHSVNLVS*LYWTLHKTIN 447
           SSS H  ++  L+ +L    + RLLR +S  + +L+  SK +   L   +++T   ++N
Sbjct: 7   SSSSHSTNLKTLFINLITHSLYRLLRSLSRARSVLIEISKHNKKRLFMMMFYTTKSSMN 65


>At4g26490.1 68417.m03812 expressed protein 
          Length = 200

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -2

Query: 409 RGSRNAAWIWLVKAPGVKRPAIGVAPVCAANFST 308
           R SR + WIW V      RP I V  +  AN  T
Sbjct: 29  RSSRTSLWIWCVAVFLAIRPRIPVFDIPNANLHT 62


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,880,582
Number of Sequences: 28952
Number of extensions: 308311
Number of successful extensions: 617
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)