Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0031
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41990.1 68418.m05112 protein kinase family protein contains ...    28   6.7  
At3g28730.1 68416.m03587 structure-specific recognition protein ...    28   6.7  

>At5g41990.1 68418.m05112 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 563

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = -1

Query: 123 DEPRLRWF--RCLLPGLSRPSSL 61
           D+P++R F  +CLLP  SRP++L
Sbjct: 256 DDPQVRQFIEKCLLPASSRPTAL 278


>At3g28730.1 68416.m03587 structure-specific recognition protein 1 /
           high mobility group protein / HMG protein nearly
           identical to SP|Q05153 Structure-specific recognition
           protein 1 homolog (HMG protein) {Arabidopsis thaliana};
           contains Pfam profile PF00505: HMG (high mobility group)
           box; contains Pfam profile PF03531: Structure-specific
           recognition protein
          Length = 646

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = -2

Query: 116 HVSGGSVVSYQDYLVRLR*WSRHFCRDLWQRFENEGHN 3
           H +GG+ + Y D L+RL+    H  R++ QR  NE HN
Sbjct: 392 HAAGGANMHYFDLLIRLKTDHEHLFRNI-QR--NEYHN 426


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,388,092
Number of Sequences: 28952
Number of extensions: 259200
Number of successful extensions: 659
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)