Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0016
         (725 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72600.1 68414.m08395 hydroxyproline-rich glycoprotein family...    29   3.1  
At1g22800.1 68414.m02848 expressed protein similar to Biotin syn...    29   4.1  
At3g45210.1 68416.m04879 expressed protein contains Pfam profile...    28   7.2  
At2g46710.1 68415.m05828 rac GTPase activating protein, putative...    28   7.2  
At1g53230.1 68414.m06032 TCP family transcription factor 3 (TCP3...    28   7.2  
At5g65410.1 68418.m08226 zinc finger homeobox family protein / Z...    27   9.6  

>At1g72600.1 68414.m08395 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 135

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 242 SLHHSQHRSHKYRSSRGHHEHPDTVPP 322
           ++H   H   K    R HH+HP   PP
Sbjct: 64  AIHEKHHHRRKKWRQRRHHKHPPPPPP 90


>At1g22800.1 68414.m02848 expressed protein similar to Biotin
           synthesis protein bioC. {Serratia marcescens}
           (SP:P36571); ESTs gb|Z34075, gb|Z34835 and gb|AA404888
           come from this gene
          Length = 355

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = +1

Query: 55  LILSTKMLFFITAAVLLASAEAKFFKDCGSKLATVHNVTVSGCEESSSHCILKRNTDATI 234
           L+   K+L   TA    A  ++ F  + G+  AT   + ++G  E SSH   KR   AT+
Sbjct: 283 LLERNKILNRETAVATAAIYDSMFATEDGTIPATFQVIYMTGWREHSSHPQAKRRGSATV 342

Query: 235 GLQFTPL 255
              FT L
Sbjct: 343 --SFTDL 347


>At3g45210.1 68416.m04879 expressed protein contains Pfam profile
           PF04520: Protein of unknown function, DUF584
          Length = 148

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 185 SHPLTVTLWTVASLDPQSLKNLASALAKSTAAVMKNN 75
           S P TVT  TVAS  P +++N +  L K     ++N+
Sbjct: 60  SSPATVTTTTVASSLPMNVQNWSKILGKENRKSIEND 96


>At2g46710.1 68415.m05828 rac GTPase activating protein, putative
           similar to rac GTPase activating protein 2 [Lotus
           japonicus] GI:3695061; contains Pfam profiles PF00620:
           RhoGAP domain, PF00786: P21-Rho-binding domain
          Length = 455

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 355 SPLSLHASDSGRGNGIGMFMMTP*TSVFMRSML 257
           +PLS HAS SG G+G G   +    +  +R  L
Sbjct: 54  TPLSSHASRSGNGSGSGQLTVVDLLAAVLRKSL 86


>At1g53230.1 68414.m06032 TCP family transcription factor 3 (TCP3)
           identical to transcription factor 3 (TCP3) [Arabidopsis
           thaliana] (GI:3243274); similar to flower development
           protein cycloidea (cyc3) GI:6358611 from [Misopates
           orontium]
          Length = 391

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +2

Query: 248 HHSQHRSHKYRSSRGHHEHPDTVPP 322
           HH  H      +   HH HP  +PP
Sbjct: 318 HHHHHHQQSMTTDDLHHHHPYHIPP 342


>At5g65410.1 68418.m08226 zinc finger homeobox family protein /
           ZF-HD homeobox family protein similar to hypothetical
           proteins (GP|4220524)(GP|3184285|)(Arabidopsis); ZP-HD
           homeobox family protein GP|13374061 (Flaveria
           bidentis);GP:5091602 {Oryza sativa}
          Length = 279

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +2

Query: 212 RETQTPRSACS--LHHSQHRSHKYRSSRGHHEHPDTVPP 322
           +ET  PR      LH+++H   K  S   HH+ P   PP
Sbjct: 230 QETGVPRQVLKVWLHNNKHTLGKSPSPLHHHQAPPPPPP 268


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,066,112
Number of Sequences: 28952
Number of extensions: 309486
Number of successful extensions: 889
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)