Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0005
         (744 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14096.1 68417.m02176 F-box family protein contains F-box dom...    29   3.3  
At1g30860.1 68414.m03774 expressed protein                             27   9.9  

>At4g14096.1 68417.m02176 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 468

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -1

Query: 732 SEMHLLCKLILKEIIAFPILEYHDLVLTQLYTL 634
           SEM L   L+  +++ +P+LE+ D+ L +L TL
Sbjct: 131 SEMFLSKTLVRLKLMLYPLLEFEDVYLPKLKTL 163


>At1g30860.1 68414.m03774 expressed protein
          Length = 730

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 178 WKRSSCQLCKAFIVDTTSLLYNYR 249
           W    C +C+A IVD   ++Y+ R
Sbjct: 706 WSGGKCPICRAQIVDVVRVIYDTR 729


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,114,481
Number of Sequences: 28952
Number of extensions: 263832
Number of successful extensions: 597
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)