Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0072
         (470 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61640.2 68414.m06946 ABC1 family protein contains Pfam domai...    27   6.4  
At1g61640.1 68414.m06945 ABC1 family protein contains Pfam domai...    27   6.4  

>At1g61640.2 68414.m06946 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 477

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 347 KYSGQKLKSSPRRVR*RHSAVE 412
           +Y+GQK+KSS   V+ RH  VE
Sbjct: 301 QYAGQKVKSSEVAVKVRHPCVE 322


>At1g61640.1 68414.m06945 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 621

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 347 KYSGQKLKSSPRRVR*RHSAVE 412
           +Y+GQK+KSS   V+ RH  VE
Sbjct: 301 QYAGQKVKSSEVAVKVRHPCVE 322


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,192,572
Number of Sequences: 28952
Number of extensions: 138255
Number of successful extensions: 229
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)