Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0071
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50420.1 68414.m05651 scarecrow-like transcription factor 3 (...    29   3.6  
At2g24090.1 68415.m02877 ribosomal protein L35 family protein co...    28   6.2  

>At1g50420.1 68414.m05651 scarecrow-like transcription factor 3
           (SCL3) identical to GB:AAD24404 GI:4580515 from
           [Arabidopsis thaliana] (Plant J. 18 (1), 111-119 (1999))
          Length = 482

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 514 TSQCLNRLIKDLTLLYK-INLKQTKNNPVRRETHQRK 621
           T    NR++K    LYK +N  QT+ N V  E H R+
Sbjct: 99  TEALANRILKSWPGLYKALNATQTRTNNVSEEIHVRR 135


>At2g24090.1 68415.m02877 ribosomal protein L35 family protein
           contains Pfam profile PF01632: ribosomal protein L35
          Length = 145

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 373 RPPVVRRRDGKSQQLQLTGNRKSLRLS 453
           R  +VRRR GK   L    N++ LRLS
Sbjct: 92  RGKIVRRRSGKQHLLAKKNNKRKLRLS 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,790,469
Number of Sequences: 28952
Number of extensions: 246603
Number of successful extensions: 461
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)