Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0068
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    29   3.9  
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro...    28   5.2  
At5g27870.1 68418.m03343 pectinesterase family protein similar t...    28   6.8  

>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 547 GAPPAPVVQIESP-TAPCPGGHHATPTFPLGG 639
           G+PP+P +    P T P PG    +PT P  G
Sbjct: 447 GSPPSPSIVPSPPSTTPSPGSPPTSPTTPTPG 478



 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 535 VRHAGAPPAPVVQIESPTAPCPGGHHATPTFP 630
           + H+  PP P+   E P  P PG  +A+P  P
Sbjct: 807 IHHSQPPPPPIY--EGPLPPIPGISYASPPPP 836


>At5g58160.1 68418.m07280 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|Q05858 Formin (Limb deformity protein) {Gallus
           gallus}; contains Pfam profile PF02181: Formin Homology
           2(FH2) Domain
          Length = 1307

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +1

Query: 550 APPAPVVQIESPTAPCPGGHHATPTFPLGGTFSTLK 657
           APP P+V   SP  P P      P  P     S +K
Sbjct: 716 APPTPIVHTSSPPPPPPPPPPPAPPTPQSNGISAMK 751


>At5g27870.1 68418.m03343 pectinesterase family protein similar to
           pectinesterase (EC 3.1.1.11) from Salix gilgiana
           GI:6714532, Lycopersicon esculentum SP|Q43143, Phaseolus
           vulgaris SP|Q43111; contains Pfam profile PF01095
           pectinesterase
          Length = 732

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 547 GAPPAPVVQIESPTAPCPGGHHATPT 624
           GAPPA    + SP+   P GH  +P+
Sbjct: 627 GAPPATPSMVVSPSTSPPAGHLGSPS 652


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,201,627
Number of Sequences: 28952
Number of extensions: 290886
Number of successful extensions: 757
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)