Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0062
         (901 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38280.2 68415.m04702 AMP deaminase, putative / myoadenylate ...    42   4e-04
At2g38280.1 68415.m04701 AMP deaminase, putative / myoadenylate ...    42   4e-04
At2g40260.1 68415.m04952 myb family transcription factor contain...    31   0.79 
At1g50590.1 68414.m05681 pirin, putative similar to SP|O00625 Pi...    31   1.4  
At4g34890.1 68417.m04948 xanthine dehydrogenase, putative simila...    29   4.2  
At5g57380.1 68418.m07169 fibronectin type III domain-containing ...    29   5.6  
At4g04885.1 68417.m00711 pre-mRNA cleavage complex-related conta...    29   5.6  

>At2g38280.2 68415.m04702 AMP deaminase, putative / myoadenylate
           deaminase, putative similar to SP|P15274 AMP deaminase
           (EC 3.5.4.6) (Myoadenylate deaminase) {Saccharomyces
           cerevisiae}; contains Pfam profile PF00962:
           Adenosine/AMP deaminase
          Length = 839

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
 Frame = -1

Query: 565 GTLTDENLMDAILLGAKRIGHAYALAKHPLLLEEVIKNDIGLEINIISNAVLSLVRDVRN 386
           G   D + + A  L    I H   L K P+L        IGL ++ +SN   SL  D   
Sbjct: 661 GEAGDIDHLAATFLTCHSIAHGINLRKSPVLQYLYYLAQIGLAMSPLSNN--SLFLDYHR 718

Query: 385 HPLSTFLSKGLPVVISSDDPGA--WEAEPLTDDFYVA 281
           +P   F  +GL V +S+DDP       EPL +++ +A
Sbjct: 719 NPFPVFFLRGLNVSLSTDDPLQIHLTKEPLVEEYSIA 755


>At2g38280.1 68415.m04701 AMP deaminase, putative / myoadenylate
           deaminase, putative similar to SP|P15274 AMP deaminase
           (EC 3.5.4.6) (Myoadenylate deaminase) {Saccharomyces
           cerevisiae}; contains Pfam profile PF00962:
           Adenosine/AMP deaminase
          Length = 839

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
 Frame = -1

Query: 565 GTLTDENLMDAILLGAKRIGHAYALAKHPLLLEEVIKNDIGLEINIISNAVLSLVRDVRN 386
           G   D + + A  L    I H   L K P+L        IGL ++ +SN   SL  D   
Sbjct: 661 GEAGDIDHLAATFLTCHSIAHGINLRKSPVLQYLYYLAQIGLAMSPLSNN--SLFLDYHR 718

Query: 385 HPLSTFLSKGLPVVISSDDPGA--WEAEPLTDDFYVA 281
           +P   F  +GL V +S+DDP       EPL +++ +A
Sbjct: 719 NPFPVFFLRGLNVSLSTDDPLQIHLTKEPLVEEYSIA 755


>At2g40260.1 68415.m04952 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 410

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -3

Query: 767 EESEPKRFVNVSPNSQRRQEGHARHFCWIRSSRTGGSGRAFNRIRTP 627
           EE E +R  + SP+S   +E    H    ++ + GGS R +NR +TP
Sbjct: 38  EEDEEERSGDQSPSSNSYEEESGSHH-HDQNKKNGGSVRPYNRSKTP 83


>At1g50590.1 68414.m05681 pirin, putative similar to SP|O00625 Pirin
           {Homo sapiens}; contains Pfam profile PF02678: Pirin
          Length = 310

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 682 FDLVGQEDLGEPLIEFAPQLLEASESLD 599
           F LV  E +GEP+++F P ++   E +D
Sbjct: 253 FILVAGEPIGEPMVQFGPFVMNTQEEID 280


>At4g34890.1 68417.m04948 xanthine dehydrogenase, putative similar
           to xanthine dehydrogenase from Gallus gallus, PIR:XOCHDH
           [SP|P47990]; contains Pfam profile PF02738 Aldehyde
           oxidase and xanthine dehydrogenase, molybdopterin
           binding domain
          Length = 1361

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 74  TGEYVITKK*HKDLLQRTLKIIDETIPISLEFP 172
           T E++I K  +KDLLQ  LK+I   + I  + P
Sbjct: 499 TEEFLIGKNWNKDLLQDALKVIQSDVVIKEDAP 531


>At5g57380.1 68418.m07169 fibronectin type III domain-containing
           protein / PHD finger protein-related contains Pfam
           profiles PF00041: Fibronectin type III domain, PF00628:
           PHD-finger
          Length = 600

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 347 CYIKRRSRSMGGGTLDGRFLCCFC 276
           C +K+    +G   LDGRF C +C
Sbjct: 160 CGLKQDRYGIGSDDLDGRFYCAYC 183


>At4g04885.1 68417.m00711 pre-mRNA cleavage complex-related contains
           weak similarity to Pre-mRNA cleavage complex II protein
           Pcf11 (Fragment) (Swiss-Prot:O94913) [Homo sapiens]
          Length = 808

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = -3

Query: 896 PSLYELDGT---AFDPVVLQKHTGRLYESCQRLS*FHRSQTNIRAIEESEPKRFVNVSPN 726
           PS+  L GT    F P VL+K   +L  S         +Q+++ A E S+P R ++V+P 
Sbjct: 160 PSMRHLFGTWSSVFPPPVLRKIDMQLQLSSAA------NQSSVGASEPSQPTRGIHVNPK 213

Query: 725 SQRRQEGHA 699
             RR E  A
Sbjct: 214 YLRRLEPSA 222


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,575,298
Number of Sequences: 28952
Number of extensions: 381548
Number of successful extensions: 1002
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2120147664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)