Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0061
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20720.1 68416.m02622 expressed protein                             44   9e-05
At3g46330.1 68416.m05017 leucine-rich repeat protein kinase, put...    27   8.2  
At3g10110.1 68416.m01211 mitochondrial import inner membrane tra...    27   8.2  
At1g18320.1 68414.m02289 mitochondrial import inner membrane tra...    27   8.2  

>At3g20720.1 68416.m02622 expressed protein 
          Length = 1083

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 37/159 (23%), Positives = 75/159 (47%), Gaps = 17/159 (10%)
 Frame = +2

Query: 227 PGWLRLTSAKCNRASFRIQW-TKLKTAPIVLNLDEVHIALEVCSEPRVMN-PSAAGALPV 400
           P  L +T+AK  +    + + + ++T PIV+ +D++ + LE   +  V   PS++ +   
Sbjct: 51  PPALSVTTAKVGKLEIMLPYVSNVQTEPIVVQIDKLDLVLEENPDADVTKGPSSSQSPTA 110

Query: 401 PGK---YSYIHKVIDGISVAVNHVQIDFNCD------------AFTSSVQISRVTVESRT 535
             K   Y +  K+ DG+++ V  V +                 A  +S+ I  + + +  
Sbjct: 111 SAKSNGYGFADKIADGMTLQVKVVNLLLETGGGANREGGAAWAAPLASITIRNLVLYTTN 170

Query: 536 PDGRKGDLRLTRIKCTDTGQLLIFKELEWQSARIEAKAH 652
              +  +L+  R   T+TG + +FK+LEW++  I+   H
Sbjct: 171 ESWKVVNLKEARDFSTNTGFIYLFKKLEWEALSIDLLPH 209


>At3g46330.1 68416.m05017 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 878

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 233 WLRLTSAKCNRASFRIQWTKLK--TAPIVLNLDEVHIALEV 349
           WL     +CN    R+Q TK +  T P +LN  EV+  L++
Sbjct: 319 WLTTNPRQCNGGICRMQLTKTQKSTLPPLLNAFEVYSVLQL 359


>At3g10110.1 68416.m01211 mitochondrial import inner membrane
           translocase subunit Tim17/Tim22/Tim23 family protein
           weak similarity to TIM22 preprotein translocase [Rattus
           norvegicus] GI:6760457; contains Pfam profile PF02466:
           Mitochondrial import inner membrane translocase subunit
           Tim17
          Length = 173

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 333 WTSSR-FSTMGAVFSLVHCILKDAR 262
           W S + F+ MG VFS   CI++ AR
Sbjct: 99  WNSCKTFAVMGLVFSAAECIVEKAR 123


>At1g18320.1 68414.m02289 mitochondrial import inner membrane
           translocase subunit Tim17/Tim22/Tim23 family protein
           contains Pfam domain PF02466: Mitochondrial import inner
           membrane translocase subunit Tim17
          Length = 129

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 333 WTSSR-FSTMGAVFSLVHCILKDAR 262
           W S + F+ MG VFS   CI++ AR
Sbjct: 55  WNSCKTFAVMGLVFSAAECIVEKAR 79


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,601,664
Number of Sequences: 28952
Number of extensions: 268840
Number of successful extensions: 532
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)