Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0058
         (725 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g24070.1 68414.m03038 glycosyl transferase family 2 protein s...    30   1.4  
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ...    29   2.4  
At1g62430.1 68414.m07043 phosphatidate cytidylyltransferase / CD...    28   5.5  
At3g09140.1 68416.m01075 expressed protein contains Pfam profile...    27   9.6  

>At1g24070.1 68414.m03038 glycosyl transferase family 2 protein
           similar to beta-(1-3)-glucosyl transferase GB:AAC62210
           GI:3687658 from [Bradyrhizobium japonicum], cellulose
           synthase from Agrobacterium tumeficiens [gi:710492] and
           Agrobacterium radiobacter [gi:710493]; contains Pfam
           glycosyl transferase, group 2 family protein domain
           PF00535
          Length = 552

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 1   VISHLGYPSASFHKELRSKNNMFSFYVI*SATYKNYFKVNLLYENIF 141
           ++  +G PS  F + + SK  M   Y++  A Y  +F   LLY  +F
Sbjct: 490 LLPRIGKPSNMFLERVNSKEIMVGIYILCCACYGLFFGNTLLYLYLF 536


>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein ACBF GB:U90212 GI:1899187
           from [Nicotiana tabacum]
          Length = 445

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 330 LLHQASYQSGHGCFNHMYRLSPLSVVRDKQRVRG-NYVTTTALNASVAE 187
           LLH       H CF+H   +S + V+R+KQ  +   Y     L+ S AE
Sbjct: 126 LLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAE 174


>At1g62430.1 68414.m07043 phosphatidate cytidylyltransferase /
           CDP-diglyceride synthetase (CDS1) identical to SP|O04928
           Phosphatidate cytidylyltransferase (EC 2.7.7.41)
           (CDP-diglyceride synthetase) (CDP-diglyceride
           pyrophosphorylase) (CDP-diacylglycerol synthase) (CDS)
           (CTP:phosphatidate cytidylyltransferase) (CDP-DAG
           synthase) (CDP-DG synthetase) {Arabidopsis thaliana}
          Length = 421

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/43 (23%), Positives = 25/43 (58%)
 Frame = +3

Query: 528 YSFTAGVSDQHVLCTYLL*KIVNYLWYLM*VIQQFYKFIYKDF 656
           Y   +G+   H+   YLL  I+ ++W+++ + ++ YK+ +  +
Sbjct: 140 YRLVSGLIKYHMAICYLL-YIIGFMWFILTLKKKMYKYQFGQY 181


>At3g09140.1 68416.m01075 expressed protein contains Pfam profile
           PF05056: Protein of unknown function (DUF674);
           expression supported by MPSS
          Length = 473

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 324 HQASYQSGHGCFNHMYR 274
           HQ S Q G GCFN++Y+
Sbjct: 54  HQKSPQVGIGCFNNLYK 70


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,707,961
Number of Sequences: 28952
Number of extensions: 281389
Number of successful extensions: 479
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)