Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0052
         (606 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40840.2 68418.m04959 cohesion family protein SYN2 (SYN2) ide...    31   0.45 
At5g65620.1 68418.m08255 peptidase M3 family protein / thimet ol...    30   1.4  
At1g78230.1 68414.m09116 leucine-rich repeat family protein            30   1.4  
At5g10540.1 68418.m01220 peptidase M3 family protein / thimet ol...    29   1.8  
At5g40840.1 68418.m04958 cohesion family protein SYN2 (SYN2) ide...    28   5.5  
At1g32415.1 68414.m04001 pentatricopeptide (PPR) repeat-containi...    27   7.3  
At1g24230.1 68414.m03055 paired amphipathic helix repeat-contain...    27   9.6  
At1g23160.1 68414.m02894 auxin-responsive GH3 family protein sim...    27   9.6  

>At5g40840.2 68418.m04959 cohesion family protein SYN2 (SYN2)
           identical to cohesion family protein SYN2 [Arabidopsis
           thaliana] GI:12006360; supporting cDNA
           gi|12006359|gb|AF281154.1|AF281154
          Length = 810

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 25/103 (24%), Positives = 43/103 (41%)
 Frame = +1

Query: 142 VRVLITNKKMASAGAVLLEARPFRPFKSSEEYLYAMKEDLAEWLTVLYPELRITADNFLD 321
           VR  ++ +     G    ++RP  PF S EE+      +  +  T+L  + ++ AD   D
Sbjct: 665 VRESMSKRFFKDPGTCYKKSRPASPFTSFEEHPSVYYVENRDLDTILMNDEQVNADERQD 724

Query: 322 RLDTGVALCRHANAVRDSAKLILDAPQPEAEDAIILAKALRSR 450
            L       R  N  +   K  L+  + E E+ + L +  R R
Sbjct: 725 -LQQETWSSRTRNVAKFLEKTFLEQREREEEEKVSLLQLCRGR 766


>At5g65620.1 68418.m08255 peptidase M3 family protein / thimet
           oligopeptidase family protein similar to SP|P27237
           Oligopeptidase A (EC 3.4.24.70) {Salmonella
           typhimurium}; contains Pfam profile PF01432: Peptidase
           family M3
          Length = 791

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
 Frame = +1

Query: 193 LEARPFRP-FKSSEEYLYAMKEDLAEWLTVLYPELRITADNFLDRLDTGVALCRHANAVR 369
           ++A   RP  ++  ++L A  E+L + +   +P+L    +  +DRL     +  H  AV+
Sbjct: 112 VDASHVRPGIRALLQHLEAELEELEKSVEPTWPKLVEPLEKIVDRLTVVWGMINHLKAVK 171

Query: 370 DSAKLILDAPQPEAEDAIILAKALRSRPPVNMLPAAK 480
           D+ +L       + E      +  +S+P  N   A +
Sbjct: 172 DTPELRAAIEDVQPEKVKFQLRLGQSKPIYNAFKAIR 208


>At1g78230.1 68414.m09116 leucine-rich repeat family protein
          Length = 676

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 312 LPRQTRHGRRFVQARERREGLR*VDPRRSTTGGRRCHHSGKSTALPS-PGQHAPSRQSR 485
           LP+   H ++ ++ +  RE L+    R +  GG   HH  K T+  S  G  +PS   R
Sbjct: 590 LPKLVYHNKQLIKPQRAREVLKDSVARAAFGGGDSLHHRRKRTSTKSVVGSASPSVHHR 648


>At5g10540.1 68418.m01220 peptidase M3 family protein / thimet
           oligopeptidase family protein similar to SP|P27237
           Oligopeptidase A (EC 3.4.24.70) {Salmonella
           typhimurium}; contains Pfam profile PF01432: Peptidase
           family M3
          Length = 701

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
 Frame = +1

Query: 193 LEARPFRP-FKSSEEYLYAMKEDLAEWLTVLYPELRITADNFLDRLDTGVALCRHANAVR 369
           ++A   RP  ++  + L A  E L + +   +P+L    +  +DRL     +  H  AV+
Sbjct: 24  VDAHHVRPGIRALLQQLEAELEQLEKAVEPSWPKLVEPLEKIIDRLSVVWGMINHLKAVK 83

Query: 370 DSAKLILDAPQPEAEDAIILAKALRSRPPVNMLPAAK 480
           D+ +L     + + E      +  +S+P  N   A +
Sbjct: 84  DTPELRAAIEEVQPEKVKFQLRLGQSKPIYNAFKAIR 120


>At5g40840.1 68418.m04958 cohesion family protein SYN2 (SYN2)
           identical to cohesion family protein SYN2 [Arabidopsis
           thaliana] GI:12006360; supporting cDNA
           gi|12006359|gb|AF281154.1|AF281154
          Length = 809

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 25/103 (24%), Positives = 42/103 (40%)
 Frame = +1

Query: 142 VRVLITNKKMASAGAVLLEARPFRPFKSSEEYLYAMKEDLAEWLTVLYPELRITADNFLD 321
           VR  ++ +     G    ++RP  PF S EE+      +  +  T+L  +  + AD   D
Sbjct: 665 VRESMSKRFFKDPGTCYKKSRPASPFTSFEEHPSVYYVENRDLDTILMND-EVNADERQD 723

Query: 322 RLDTGVALCRHANAVRDSAKLILDAPQPEAEDAIILAKALRSR 450
            L       R  N  +   K  L+  + E E+ + L +  R R
Sbjct: 724 -LQQETWSSRTRNVAKFLEKTFLEQREREEEEKVSLLQLCRGR 765


>At1g32415.1 68414.m04001 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 761

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 362 AFACLHKATPVSSLSRKLSAVILSSGYSTVSHSAR 258
           A+AC         L  +L A ++S+G+ TV H  R
Sbjct: 306 AYACGGLGVEFRRLGEQLHAQVISNGWETVDHDGR 340


>At1g24230.1 68414.m03055 paired amphipathic helix repeat-containing
           protein weak similarity to transcriptional co-repressor
           SIN3A [Drosophila melanogaster] GI:2570794; contains
           Pfam profile PF02671: Paired amphipathic helix repeat
          Length = 245

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 17/66 (25%), Positives = 26/66 (39%)
 Frame = +1

Query: 193 LEARPFRPFKSSEEYLYAMKEDLAEWLTVLYPELRITADNFLDRLDTGVALCRHANAVRD 372
           L A     F     Y+Y++KE   +        L I  D    R+D   A+ R    ++D
Sbjct: 76  LPAEAKETFHDVRSYIYSLKESFRDEPAKYAQFLEILNDYSARRVDAPSAVARMTELMKD 135

Query: 373 SAKLIL 390
              L+L
Sbjct: 136 HRNLVL 141


>At1g23160.1 68414.m02894 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591,  auxin-responsive GH3 homologue [Arabidopsis
           thaliana] GI:11041726; contains Pfam profile PF03321:
           GH3 auxin-responsive promoter
          Length = 578

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 367 RDSAKLILDAPQPEAEDAI 423
           RDS  L+L  P PEA D I
Sbjct: 258 RDSVSLVLGGPHPEAADTI 276


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,654,974
Number of Sequences: 28952
Number of extensions: 260067
Number of successful extensions: 620
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)