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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0049
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso...   355   1e-98
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)             355   2e-98
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai...   355   2e-98
At4g38440.1 68417.m05432 expressed protein                             31   0.72 
At4g10710.1 68417.m01751 transcriptional regulator-related simil...    31   0.72 
At1g29760.1 68414.m03639 expressed protein                             31   0.72 
At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase, ...    29   2.9  
At1g54440.1 68414.m06210 3'-5' exonuclease domain-containing pro...    29   3.8  
At4g08180.3 68417.m01353 oxysterol-binding family protein simila...    28   5.1  
At4g08180.2 68417.m01352 oxysterol-binding family protein simila...    28   5.1  
At4g08180.1 68417.m01351 oxysterol-binding family protein simila...    28   5.1  
At2g26730.1 68415.m03206 leucine-rich repeat transmembrane prote...    28   6.7  
At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical...    27   8.9  
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea...    27   8.9  
At5g16910.1 68418.m01982 cellulose synthase family protein simil...    27   8.9  
At2g38570.1 68415.m04738 expressed protein ; expression supporte...    27   8.9  

>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
           protein S4, Arabidopsis thaliana, PIR:T48480
          Length = 262

 Score =  355 bits (874), Expect = 1e-98
 Identities = 160/230 (69%), Positives = 192/230 (83%)
 Frame = +1

Query: 1   KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 180
           KRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  EV+ I+ QR 
Sbjct: 10  KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRH 69

Query: 181 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 360
           I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +
Sbjct: 70  IQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSI 129

Query: 361 ATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNL 540
             G K +PYL T+DGRTIRYPDPLIK ND+I+LD+   KI++FIKF+ GN+ M+TGGRN 
Sbjct: 130 QFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNR 189

Query: 541 GRVGTIVSRERHPGSFDIVHIKDSTGHTFSTRLNNVFIIGKGTKAYISLP 690
           GRVG I +RE+H GSF+ +HI+DSTGH F+TRL NV+ IGKGTK ++SLP
Sbjct: 190 GRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLP 239


>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
          Length = 262

 Score =  355 bits (873), Expect = 2e-98
 Identities = 160/230 (69%), Positives = 192/230 (83%)
 Frame = +1

Query: 1   KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 180
           KRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  EV+ I+ QR 
Sbjct: 10  KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRH 69

Query: 181 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 360
           I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +
Sbjct: 70  IQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSI 129

Query: 361 ATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNL 540
             G K +PYL T+DGRTIRYPDPLIK ND+I+LD+   KI++FIKF+ GN+ M+TGGRN 
Sbjct: 130 QFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNR 189

Query: 541 GRVGTIVSRERHPGSFDIVHIKDSTGHTFSTRLNNVFIIGKGTKAYISLP 690
           GRVG I +RE+H GSF+ +HI+DSTGH F+TRL NV+ IGKGTK ++SLP
Sbjct: 190 GRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLP 239


>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
           ribosomal protein S4 signature from residues 8 to 22
          Length = 261

 Score =  355 bits (873), Expect = 2e-98
 Identities = 160/230 (69%), Positives = 192/230 (83%)
 Frame = +1

Query: 1   KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 180
           KRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  EV+ I+ QR 
Sbjct: 10  KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRH 69

Query: 181 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 360
           I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +
Sbjct: 70  IQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSI 129

Query: 361 ATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNL 540
             G K +PYL T+DGRTIRYPDPLIK ND+I+LD+   KI++FIKF+ GN+ M+TGGRN 
Sbjct: 130 QFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNR 189

Query: 541 GRVGTIVSRERHPGSFDIVHIKDSTGHTFSTRLNNVFIIGKGTKAYISLP 690
           GRVG I +RE+H GSF+ +HI+DSTGH F+TRL NV+ IGKGTK ++SLP
Sbjct: 190 GRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLP 239


>At4g38440.1 68417.m05432 expressed protein
          Length = 1465

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
 Frame = +1

Query: 1    KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL----VIFLRNRLKYALTGNEVLKIV 168
            +R+  P  W L  +  V++ + STGP +  E L +    V FL      +  G+    +V
Sbjct: 1140 QRMPLPPHWFLSAISAVHSGKTSTGPPESTELLEVAKAGVFFLAGLESSSGFGSLPSPVV 1199

Query: 169  KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRF 300
               L+    K     T     MD++  + T  L+  + ++ G+F
Sbjct: 1200 SVPLV---WKFHALSTVLLVGMDIIEDKNTRNLYNYLQELYGQF 1240


>At4g10710.1 68417.m01751 transcriptional regulator-related similar
           to chromatin-specific transcription elongation factor
           FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
          Length = 1074

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 98  KHSRNLWGPVDGLGAYTPPSLSNIHAL 18
           KHS +LWG  D L   TPP+  ++  L
Sbjct: 44  KHSADLWGSADALAIATPPASDDLRYL 70


>At1g29760.1 68414.m03639 expressed protein
          Length = 526

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 209 SVLTFPSTFMRRCFTIFRTSFPVKAYFRRFL 117
           S+LTFP   +R CF  F   F    + RRFL
Sbjct: 195 SLLTFPPWLLRNCFLFFFDPFSTIRFGRRFL 225


>At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase,
           putative / steroid 5-alpha-reductase, putative identical
           to gi:1280611; contains a steroid 5-alpha reductase,
           C-terminal domain
          Length = 262

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -3

Query: 188 TFMRRCFTIFRTSFPVKAYFRRFLRKITRGKHSRNLWGP 72
           TF R C      + P  A   +FL+    GKH+R  WGP
Sbjct: 8   TFFRYCLLTLIFAGPPTAVLLKFLQA-PYGKHNRTGWGP 45


>At1g54440.1 68414.m06210 3'-5' exonuclease domain-containing
           protein / helicase and RNase D C-terminal
           domain-containing protein / HRDC domain-containing
           protein similar to SP|Q01780 Polymyositis/scleroderma
           autoantigen 2 {Homo sapiens}; contains Pfam profiles
           PF00570: HRDC domain, PF01612: 3'-5' exonuclease
          Length = 738

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 686 SEMYALVPLPIMNTLFNLVEKVCPVESLMCTM 591
           SEM  + PLP+  T F LVE+V  +E L   +
Sbjct: 213 SEMRPVKPLPLEETPFKLVEEVKDLEDLAAAL 244


>At4g08180.3 68417.m01353 oxysterol-binding family protein similar
           to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 813

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 121 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY-PAGFMDVVSIEK 255
           N  ++A+T NE+   +K+RL   D ++R D  Y   G  ++ + EK
Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEK 748


>At4g08180.2 68417.m01352 oxysterol-binding family protein similar
           to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 813

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 121 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY-PAGFMDVVSIEK 255
           N  ++A+T NE+   +K+RL   D ++R D  Y   G  ++ + EK
Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEK 748


>At4g08180.1 68417.m01351 oxysterol-binding family protein similar
           to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 814

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 121 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY-PAGFMDVVSIEK 255
           N  ++A+T NE+   +K+RL   D ++R D  Y   G  ++ + EK
Sbjct: 704 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEK 749


>At2g26730.1 68415.m03206 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 658

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 397 HDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITG 528
           H+  +  +P    ++N+ I+LDI++      I F   NL  +TG
Sbjct: 124 HNEFSGEFPTSFTQLNNLIRLDISSNNFTGSIPFSVNNLTHLTG 167


>At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical to
           UVB-resistance protein UVR8 (GI:5478530, GB:AAD43920.1)
           [Arabidopsis thaliana]; contains Pfam 00415: Regulator
           of chromosome condensation (RCC1)
          Length = 440

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +1

Query: 529 GRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFS-TRLNNVFIIGKGTKAYISL 687
           G NL +   +  + R P    +V +     HT + T  NNVF  G+GT   + +
Sbjct: 311 GNNLDQCSPV--QVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGI 362


>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
           family protein similar to TBP-associated factor
           (GI:1732075) [Homo sapiens] and to 100 kDa subunit of
           Pol II transcription factor (GI:1491718) {Homo sapiens];
           contains Pfam PF00400: WD domain, G-beta repeat (6
           copies)|8689032|gb|AV528749.1|AV528749
          Length = 666

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 7/99 (7%)
 Frame = +1

Query: 391 VTHDGRTIR--YPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN----LGRVG 552
           ++HDG  +   + D  IKV D  ++  A +  +      S       G R+    LG  G
Sbjct: 360 ISHDGSLVAGGFSDSSIKVWDMAKIGQAGSGALQAENDSSDQSIGPNGRRSYTLLLGHSG 419

Query: 553 TIVSRE-RHPGSFDIVHIKDSTGHTFSTRLNNVFIIGKG 666
            + S     PG F +    D+T   +ST+LN   +  KG
Sbjct: 420 PVYSATFSPPGDFVLSSSADTTIRLWSTKLNANLVCYKG 458


>At5g16910.1 68418.m01982 cellulose synthase family protein similar
           to gi:2827143 cellulose synthase catalytic subunit,
           Arabidopsis thaliana, gi:9622886 cellulose synthase-7
           from Zea mays
          Length = 1145

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 665 PLPIMNTLFNLVEKVCPVESLMCTMSKEPGCL 570
           PL   NT+ +++    PVE L C +S + G L
Sbjct: 395 PLVTANTILSILAAEYPVEKLSCYVSDDGGAL 426


>At2g38570.1 68415.m04738 expressed protein ; expression supported
           by MPSS
          Length = 302

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 472 TKIMDFIKFESGNLCMITGGRNLGRVGT 555
           T I+ +IK   G   +  GGRN+G+V T
Sbjct: 196 TYILVYIKISVGYRVVTPGGRNIGKVST 223


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,743,897
Number of Sequences: 28952
Number of extensions: 376834
Number of successful extensions: 1159
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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