Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0046
         (423 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18770.1 68416.m02382 expressed protein                             28   2.3  
At1g55820.1 68414.m06400 hydroxyproline-rich glycoprotein family...    27   4.0  

>At3g18770.1 68416.m02382 expressed protein 
          Length = 625

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -1

Query: 369 ISCGAGCRRGD-HAVQAQPCSRESPP 295
           +SC     R D HA+ + PCSR  PP
Sbjct: 324 VSCSPSPTRSDSHALVSHPCSRHLPP 349



 Score = 26.2 bits (55), Expect = 9.1
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 354 GCRRGDHAVQAQPCSRESPPLTASARPPHASSLAIHSTDKA 232
           G R+  +  +  PC   SPP + SA P HA    I  T+ A
Sbjct: 357 GRRKESYPEEYSPCQDFSPPPSPSA-PKHAVPRGITRTESA 396


>At1g55820.1 68414.m06400 hydroxyproline-rich glycoprotein family
           protein
          Length = 575

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 333 AVQAQPCSRESPPLTASARPPHASSLA 253
           A + QP +  SPP++  + PP  SS+A
Sbjct: 348 AAETQPGNSNSPPISLVSYPPDQSSIA 374


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,353,415
Number of Sequences: 28952
Number of extensions: 150967
Number of successful extensions: 406
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)