Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0043
         (765 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55320.1 68414.m06319 acyl-activating enzyme 18 (AAE18) nearl...    28   5.9  
At2g02690.1 68415.m00208 hypothetical protein                          28   7.8  

>At1g55320.1 68414.m06319 acyl-activating enzyme 18 (AAE18) nearly
           identical to acyl-activating enzyme 18 [Arabidopsis
           thaliana] GI:29893268; similar to acetyl-CoA synthetase
           [SP|P27095] from Methanothrix soehngenii; contains Pfam
           AMP-binding enzyme domain PF00501l; identical to cDNA
           acyl-activating enzyme 18 (At1g55320) GI: 29893267
          Length = 725

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 166 CSVAVTPSSYTLRTVGTKIFHLSKYELILLNNYVLRGGR 282
           C V     S+  + + T++  +SK + I   +Y+LRGGR
Sbjct: 255 CIVVSIADSFAAKEIATRL-KISKAKGIFTQDYILRGGR 292


>At2g02690.1 68415.m00208 hypothetical protein
          Length = 623

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 478 VSCDVIFHNRAIEQGWTRSPPTRHSQHA*SIYLSVIR 368
           V CDV +H   IE     S PT H++H   +  S +R
Sbjct: 156 VECDVTYHKECIESPLEISYPT-HAKHTLQLCFSSLR 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,019,892
Number of Sequences: 28952
Number of extensions: 269102
Number of successful extensions: 435
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)