Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0042
         (762 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26600.1 68417.m03834 nucleolar protein, putative similar to ...    33   0.27 
At1g77180.1 68414.m08991 chromatin protein family contains Pfam ...    32   0.48 
At1g43850.1 68414.m05052 SEUSS transcriptional co-regulator iden...    29   2.6  
At3g22104.1 68416.m02789 phototropic-responsive NPH3 protein-rel...    28   5.9  
At5g46020.1 68418.m05659 expressed protein                             28   7.8  

>At4g26600.1 68417.m03834 nucleolar protein, putative similar to
           SP|P46087 Proliferating-cell nucleolar antigen p120
           (Proliferation-associated nucleolar protein p120) {Homo
           sapiens}; contains Pfam profile PF01189: NOL1/NOP2/sun
           family
          Length = 671

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +2

Query: 110 RKMPRGKFTNHKGRNRKFTSPE--ELEEQRKHDEQKKKWRKE 229
           RK PR K   HKG+  K T  E   +EE RK  +++ +W+ E
Sbjct: 607 RKNPRSKEI-HKGKRNKNTKTESGNVEEPRKQKKKRSQWKNE 647


>At1g77180.1 68414.m08991 chromatin protein family contains Pfam
           domain, PF02731: SKIP/SNW domain found in chromatin
           proteins.
          Length = 613

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
 Frame = +2

Query: 119 PRGKFTNH---KGRNRKFTSPEELEEQRKHDEQKKKWRKEQ 232
           PRG + N+   +GR R+   P+E  E+R+   Q++K R+E+
Sbjct: 367 PRGDYDNYDQDRGREREREEPQETREEREKRIQREKIREER 407


>At1g43850.1 68414.m05052 SEUSS transcriptional co-regulator
           identical to SEUSS transcriptional co-regulator
           [Arabidopsis thaliana] gi|18033922|gb|AAL57277
          Length = 877

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +1

Query: 475 GLQPIRSFTLKVKRSKRALTSLDSPSFANNAKKQLSAERQRKNLKKILQLKKGRQSSL 648
           G   + SF      S R+   +    F+N +  QL AE+QR    +    + G+Q S+
Sbjct: 94  GFSGLSSFNASSMVSPRSSGQVQGQQFSNVSANQLLAEQQRNKKMETQSFQHGQQQSM 151


>At3g22104.1 68416.m02789 phototropic-responsive NPH3
           protein-related contains BTB/POZ domain,
           INTERPRO:IPR000210
          Length = 506

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +2

Query: 125 GKFTNHKGRNRKFTSPEELEEQRKHDEQKKKWRK 226
           G+   H  RN+KF + E L+EQ++  +Q+++ ++
Sbjct: 408 GESRAHISRNQKFQAIETLDEQQQQQQQQQQQKQ 441


>At5g46020.1 68418.m05659 expressed protein
          Length = 164

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 323 KAKGVSGLIEVENPNRV 373
           K KG   +IEV+NPNRV
Sbjct: 64  KKKGAEAVIEVDNPNRV 80


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,766,712
Number of Sequences: 28952
Number of extensions: 128984
Number of successful extensions: 423
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)