Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0033
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g42970.1 68418.m05241 COP9 signalosome complex subunit 4 / CS... 175 2e-44
At5g32590.1 68418.m03867 myosin heavy chain-related similar to M... 33 0.24
At5g64270.1 68418.m08074 splicing factor, putative similar to sp... 32 0.42
At1g58450.1 68414.m06649 peptidyl-prolyl cis-trans isomerase FKB... 30 1.3
At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containi... 29 2.2
At1g65130.1 68414.m07384 ubiquitin carboxyl-terminal hydrolase-r... 29 2.2
At5g38090.1 68418.m04589 hypothetical protein 28 5.2
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 28 6.8
At3g14225.1 68416.m01798 GDSL-motif lipase/hydrolase family prot... 28 6.8
At3g05340.1 68416.m00582 pentatricopeptide (PPR) repeat-containi... 28 6.8
At2g28605.1 68415.m03477 expressed protein 28 6.8
At5g16720.1 68418.m01958 expressed protein contains Pfam profile... 27 9.0
At4g38180.1 68417.m05390 far-red impaired responsive protein, pu... 27 9.0
At3g02690.1 68416.m00260 integral membrane family protein simila... 27 9.0
At1g53940.1 68414.m06143 GDSL-motif lipase/hydrolase family prot... 27 9.0
>At5g42970.1 68418.m05241 COP9 signalosome complex subunit 4 / CSN
complex subunit 4 (CSN4) (COP8) (FUS4) FUSCA4, COP8,
CSN4; identical to CSN complex subunit 4 [Arabidopsis
thaliana] GI:18056659, COP8 [Arabidopsis thaliana]
GI:5802627; contains Pfam profile PF01399: PCI domain;
identical to cDNA CSN complex subunit 4 (CSN4)
GI:18056658
Length = 397
Score = 175 bits (426), Expect = 2e-44
Identities = 88/192 (45%), Positives = 128/192 (66%)
Frame = +2
Query: 119 GLHKDQAEKYRNVLMEILKSTEQELSESLKAFIEAIVNENVSLVISRQLLTDVSTHLALL 298
G + + E+Y+ +L +L S + L ++ + FI+ I++++V LV+SRQLL + L L
Sbjct: 12 GDQRQKIEQYKLILSSVLSSND--LLQAQR-FIDHILSDDVPLVVSRQLLQSFAQELGRL 68
Query: 299 ADNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYERNQNWKEAANVLVGIPLETGQ 478
+E++ F L IQPRV+SFEEQ IR+ LA +YE Q W +AA +L GI L++G
Sbjct: 69 EPETQKEIAQFTLTQIQPRVVSFEEQALVIREKLAGLYESEQEWSKAAQMLSGIDLDSGM 128
Query: 479 KQYSVDYKLETYLKIARLYLEVDDPVQAEAFVNRASLLQAETTNEQLQIYYKVCYARVLD 658
+ ++KL ++IARLYLE DD V AEAF+N+AS L + + NE L + YKVCYAR+LD
Sbjct: 129 RAVDDNFKLSKCIQIARLYLEDDDAVNAEAFINKASFLVSNSQNEVLNLQYKVCYARILD 188
Query: 659 YRRKFIEAAQRY 694
+RKF+EAA RY
Sbjct: 189 MKRKFLEAALRY 200
>At5g32590.1 68418.m03867 myosin heavy chain-related similar to
Myosin heavy chain, non-muscle (Zipper protein) (Myosin
II)(SP:Q99323) {Drosophila melanogaster}
Length = 761
Score = 32.7 bits (71), Expect = 0.24
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Frame = +2
Query: 98 SELRNSGGLHKDQAEKYRNVLMEILKSTEQELSESLKAFIEAIVNENVSLVISRQLLTDV 277
SEL S G +DQ ++Y + + E L + LSES + + + N+ L + Q + +
Sbjct: 515 SELMKSNGELQDQYQRY-DKIQEELSTARDTLSESESSAYD-LSNQLSELQLKYQAVANY 572
Query: 278 -STHLALLADNVSQEVSHFALDVIQPRVISFEEQVASIRQHL-ADIYERNQN 427
LA A +EV +++IQ +I Q +R L +DI E N
Sbjct: 573 RDAKLARSASKARKEVKGRGMELIQGAIIFI--QTEKVRTELESDIKEYESN 622
>At5g64270.1 68418.m08074 splicing factor, putative similar to
splicing factor 3B subunit 1 (Spliceosome associated
protein 155) (SAP 155) (SF3b155) (Pre-mRNA splicing
factor SF3b 155 kDa subunit) (146 kDa nuclear protein)
SP:O57683 from [Xenopus laevis]
Length = 1269
Score = 31.9 bits (69), Expect = 0.42
Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Frame = +2
Query: 128 KDQAEKYRNVLMEILKSTEQELSES-LKAFIEAIVNENVSLVISRQLLTDVSTHL---AL 295
KD++E+YR ++ME + L S + A +E ++ + + Q D + L
Sbjct: 822 KDESEQYRRMVMETIDKVVTNLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGA 881
Query: 296 LADNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYER 418
+ + + Q V + + + A +RQ AD+ R
Sbjct: 882 VVNALGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISR 922
>At1g58450.1 68414.m06649 peptidyl-prolyl cis-trans isomerase
FKBP-type family protein similar to rof1 from
(Arabidopsis thaliana) GI:1373396, GI:1354207; contains
Pfam profile PF00515 TPR Domain
Length = 164
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +2
Query: 524 ARLYLEVDDPVQAEAFVNRASLLQAETTNEQLQIYYK 634
A+ Y+EV D + AE +NRA L+A+ N +++ YK
Sbjct: 99 AQSYIEVGDLISAEMDINRA--LEADPENREVKSLYK 133
>At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 551
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/51 (35%), Positives = 31/51 (60%)
Frame = -3
Query: 339 SSAKWETSCETLSASSAKCVLTSVKSCLEITRLTFSLTIASMNAFNDSDNS 187
S+ K +T+ +S SSAK T V S + + SL++A+ ++ +DSD+S
Sbjct: 407 SAGKKKTTSSPVS-SSAKTTSTPVSSSPDTSSFLLSLSLAADSSSSDSDSS 456
>At1g65130.1 68414.m07384 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1086
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/55 (30%), Positives = 33/55 (60%)
Frame = +2
Query: 215 IEAIVNENVSLVISRQLLTDVSTHLALLADNVSQEVSHFALDVIQPRVISFEEQV 379
++++V V LV S+ LL + ++ ++LL D VS V + ++QP + EE++
Sbjct: 630 LKSVVTYKVPLVDSKILLVE-NSRISLLKDLVSLSVFDYRSYILQPVKLYLEEEL 683
>At5g38090.1 68418.m04589 hypothetical protein
Length = 146
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 161 MEILKSTEQELSESLKAFIEAIVNENVSLVISRQLLTDVSTHLAL 295
M+ K E++ES A++ + N+ VI LL +ST LAL
Sbjct: 53 MKFTKIPFNEVAESWIAYVMGRICNNIGFVIFLHLLYCISTRLAL 97
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/88 (21%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +2
Query: 77 QSVRQYLSELRNSGGLHKDQAEKYRNVLMEILKSTEQELSESLKAFIEAIVNENVSLVIS 256
QSV Y+ + +G + + + ++ E E E +K+F+ + N+++ ++
Sbjct: 415 QSVTGYIHRIGRTGRAYSSGSS------VSLISPDEMEGFEDIKSFLASDKNKDIDIITP 468
Query: 257 RQLLTDVSTH-LALLADNVSQEVSHFAL 337
LLT+ + L A++V++ V+ A+
Sbjct: 469 FPLLTENAVESLRYRAEDVAKSVTKIAV 496
>At3g14225.1 68416.m01798 GDSL-motif lipase/hydrolase family protein
contains Pfam profile PF00657: Lipase/Acylhydrolase with
GDSL-like motif
Length = 377
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 372 NRWPVSDST*QISTSEIKTGRKLLMF*LEYHW 467
N WP +T + T + GR ++ F EY W
Sbjct: 63 NFWPYGKTTFKFPTGRVSDGRIMIDFIAEYAW 94
>At3g05340.1 68416.m00582 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 658
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +2
Query: 398 LADIYERNQNWKEAANVL-----VGIPLETGQKQYSVDYKLETYLKIARLYLEVD 547
+A+IY WKE A + +G+ ETG +++K +++ +L+ + +
Sbjct: 566 IANIYSSRGKWKERAKTIKRMKAMGVTKETGISSIEIEHKTHSFVVEDKLHPQAE 620
>At2g28605.1 68415.m03477 expressed protein
Length = 232
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +2
Query: 341 VIQPRVISFEEQVAS---IRQHLADIYERNQNWKEAANVLVGIPLETGQKQYSVDYKLET 511
V+ P I +Q S + L + +R ++ KEA V VG GQ+ Y +YK+++
Sbjct: 118 VVSPVRIKSLDQFGSPQFVADKLINAEKRKESTKEAEVVSVGERAGLGQQVYEFEYKIDS 177
>At5g16720.1 68418.m01958 expressed protein contains Pfam profile
PF04576: Protein of unknown function, DUF593
Length = 675
Score = 27.5 bits (58), Expect = 9.0
Identities = 42/186 (22%), Positives = 78/186 (41%), Gaps = 6/186 (3%)
Frame = +2
Query: 131 DQAEKYRNVLMEILKSTEQELSESLKAFIEAIVNENVSLVISRQLLTDVSTHLALLADNV 310
DQ E +N ++ E++ E+ K ++ +VS + +++L A D
Sbjct: 282 DQFES-KNFTGSQIEEEEEDREETTKE-LDPETPTSVSTLFNKKLHFLARNEYAAAEDAG 339
Query: 311 SQEVSHFALDVIQP-RVIS-FEEQVASIRQHLADIYERNQNWKEA----ANVLVGIPLET 472
V +D P R I E V + ++ L D+Y + + A AN + +
Sbjct: 340 DGNVLVSEMDGGDPLRTIERLRETVRAEQEALRDLYAELEEERSASAISANQTMAMITRL 399
Query: 473 GQKQYSVDYKLETYLKIARLYLEVDDPVQAEAFVNRASLLQAETTNEQLQIYYKVCYARV 652
+++ V + Y ++ E D +A +N +++ E EQLQ +V A+V
Sbjct: 400 QEEKAKVQMEALQYQRMMEEQAEYDQ--EALQLLNHL-MVKREKEKEQLQRELEVYRAKV 456
Query: 653 LDYRRK 670
L+Y K
Sbjct: 457 LEYESK 462
>At4g38180.1 68417.m05390 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
contains Pfam:PF03101 domain: FAR1 family and PF04434:
SWIM zinc finger
Length = 788
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 95 LSELRNSGGLHKDQAEKYRNVLMEILKSTE-QELSESLK 208
+++LRN L + E YR L+ +LK E Q+L S+K
Sbjct: 738 INQLRNELELANRKCEAYRTNLLSVLKEMEDQKLQVSIK 776
>At3g02690.1 68416.m00260 integral membrane family protein similar
to PecM protein (GI:5852331) {Vogesella indigofera} and
PecM protein (SP:P42194) [Erwinia chrysanthemi]
Length = 417
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 303 SASSAKCVLTSVKSCLEITRLT 238
S+SS+ C S SCL ITR T
Sbjct: 12 SSSSSSCFFASPNSCLSITRRT 33
>At1g53940.1 68414.m06143 GDSL-motif lipase/hydrolase family protein
similar to lipase GI:1145627 from (Arabidopsis
thaliana); contains Pfam profile PF00657:
Lipase/Acylhydrolase with GDSL-like motif
Length = 436
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +3
Query: 372 NRWPVSDST*QISTSEIKTGRKLLMF*LEYHW 467
N WP +T + T + GR + F EY W
Sbjct: 65 NYWPYGQTTFKFPTGRVSDGRTIPDFIAEYAW 96
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,751,530
Number of Sequences: 28952
Number of extensions: 296068
Number of successful extensions: 875
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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