SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0022
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72650.2 68414.m08402 myb family transcription factor contain...    32   0.31 
At1g72650.1 68414.m08401 myb family transcription factor contain...    32   0.31 
At3g60850.1 68416.m06807 expressed protein                             31   0.54 
At4g10170.2 68417.m01665 synaptobrevin-related family protein si...    30   1.3  
At4g10170.1 68417.m01664 synaptobrevin-related family protein si...    30   1.3  
At5g64540.1 68418.m08111 hypothetical protein                          29   2.9  
At5g39660.2 68418.m04803 Dof-type zinc finger domain-containing ...    29   2.9  
At5g39660.1 68418.m04802 Dof-type zinc finger domain-containing ...    29   2.9  
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ...    28   6.7  
At5g18980.1 68418.m02255 expressed protein                             27   8.9  
At5g11460.1 68418.m01338 senescence-associated protein-related s...    27   8.9  
At2g19190.1 68415.m02239 light-responsive receptor protein kinas...    27   8.9  

>At1g72650.2 68414.m08402 myb family transcription factor contains
           Pfam PF00249: Myb-like DNA-binding domain
          Length = 630

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = +1

Query: 40  VTGTMNGHSTSHSVDTRKRLTPIPDINTTGNHTPYKVQKALVENTMVPCINSKPYQYTEL 219
           V GT+         + + R+TP    N  GN   YK+ +   + ++VP  + +  +  + 
Sbjct: 4   VVGTVEDRRDMFEGNAQTRITPFSSTNQIGNPVAYKLVRVSGDGSLVPATDEEILEVNDT 63

Query: 220 LMTLP 234
            M +P
Sbjct: 64  DMHIP 68


>At1g72650.1 68414.m08401 myb family transcription factor contains
           Pfam PF00249: Myb-like DNA-binding domain
          Length = 624

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = +1

Query: 40  VTGTMNGHSTSHSVDTRKRLTPIPDINTTGNHTPYKVQKALVENTMVPCINSKPYQYTEL 219
           V GT+         + + R+TP    N  GN   YK+ +   + ++VP  + +  +  + 
Sbjct: 4   VVGTVEDRRDMFEGNAQTRITPFSSTNQIGNPVAYKLVRVSGDGSLVPATDEEILEVNDT 63

Query: 220 LMTLP 234
            M +P
Sbjct: 64  DMHIP 68


>At3g60850.1 68416.m06807 expressed protein 
          Length = 648

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = +1

Query: 55  NGHSTSHSVDTRKRLTPIPDINTTGNHTPYKVQKALVENTMVPCINSKPYQYTELLMTLP 234
           N  S S S + R+R      ++      P ++Q+   ++ +V CI  K  +Y   +  + 
Sbjct: 252 NADSGSASRNKRRRFEYTESLDVPAKEVPDRLQQLAAKHKVVLCIRQKYIRYKPFMAEVK 311

Query: 235 DLASH 249
           D A H
Sbjct: 312 DYACH 316


>At4g10170.2 68417.m01665 synaptobrevin-related family protein
           similar to Vesicle-associated membrane protein 722
           (AtVAMP722) Synaptobrevin-related protein 1 (SP:P47192)
           {Arabidopsis thaliana}; vesicle-associated membrane
           protein 7B, Arabidopsis thaliana, AF025333
          Length = 254

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -2

Query: 254 KKWLARSGRVISSSVYW*GFELMQGTIVFSTNAFCTLYGVWLPV 123
           K+ ++ SGR ++ S  W    L+Q  +        TL+G+WL +
Sbjct: 202 KECVSSSGRSVTQSFEWKWRRLVQIVLAIDAAICLTLFGIWLAI 245


>At4g10170.1 68417.m01664 synaptobrevin-related family protein
           similar to Vesicle-associated membrane protein 722
           (AtVAMP722) Synaptobrevin-related protein 1 (SP:P47192)
           {Arabidopsis thaliana}; vesicle-associated membrane
           protein 7B, Arabidopsis thaliana, AF025333
          Length = 254

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -2

Query: 254 KKWLARSGRVISSSVYW*GFELMQGTIVFSTNAFCTLYGVWLPV 123
           K+ ++ SGR ++ S  W    L+Q  +        TL+G+WL +
Sbjct: 202 KECVSSSGRSVTQSFEWKWRRLVQIVLAIDAAICLTLFGIWLAI 245


>At5g64540.1 68418.m08111 hypothetical protein 
          Length = 440

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 4   TANTTTMNVPPQVTGTMNGHSTSHSVDTRKRLTPIPDINTT 126
           T  +TT+ V    + T + HS+S SVD    +  IPD++++
Sbjct: 305 TPISTTLTVDLNTSTTTSTHSSSPSVDRLDTVAQIPDLSSS 345


>At5g39660.2 68418.m04803 Dof-type zinc finger domain-containing
           protein similar to H-protein promoter binding factor-2a
           GI:3386546 from [Arabidopsis thaliana]
          Length = 457

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 241 ASHFFPRVSLTTCRAMLDALGLILYRPNSTQLQVL-RNSGKCKSAAAGEN 387
           ASH+   VS+T+  AM       L  PN   L     +S  C+S A+G N
Sbjct: 194 ASHYNRHVSITSAEAMQKVARTDLQHPNGANLLTFGSDSVLCESMASGLN 243


>At5g39660.1 68418.m04802 Dof-type zinc finger domain-containing
           protein similar to H-protein promoter binding factor-2a
           GI:3386546 from [Arabidopsis thaliana]
          Length = 457

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 241 ASHFFPRVSLTTCRAMLDALGLILYRPNSTQLQVL-RNSGKCKSAAAGEN 387
           ASH+   VS+T+  AM       L  PN   L     +S  C+S A+G N
Sbjct: 194 ASHYNRHVSITSAEAMQKVARTDLQHPNGANLLTFGSDSVLCESMASGLN 243


>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
           protein low similarity to RRM-containing protein SEB-4
           [Xenopus laevis] GI:8895698; contains Pfam profile:
           PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
           domain)
          Length = 285

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 127 GNHTPYKVQKALVENTMVPCINSKPYQYTELLMTLPD 237
           G ++PY  Q+ L    +   +NS  YQY +L  T+P+
Sbjct: 175 GLYSPYMGQQYLQVYGVPGAVNSPVYQYGQLSQTIPN 211


>At5g18980.1 68418.m02255 expressed protein
          Length = 835

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 349 NSGKCKSAAAGENGMALVQVRDVMHHMLQFKYMLRSGLG 465
           N+GKC      E    +  VRDV+ H  ++  + + G+G
Sbjct: 539 NTGKCLRREISEIVFTVSNVRDVLKHGARYPKLQKLGIG 577


>At5g11460.1 68418.m01338 senescence-associated protein-related
          similar to senescence-associated protein SAG102
          (GI:22331931) [Arabidopsis thaliana]
          Length = 344

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 9  QHNNYERASASDRHDEWPLNLSLRGH 86
          QH+NY+  +ASD +   P+  ++R H
Sbjct: 3  QHSNYQMTTASDYYSTKPVLSAIRSH 28


>At2g19190.1 68415.m02239 light-responsive receptor protein kinase /
           senescence-responsive receptor-like serine/threonine
           kinase, putative (SIRK) similar to light repressible
           receptor protein kinase [Arabidopsis thaliana]
           gi|1321686|emb|CAA66376; contains Pfam profiles PF00069:
           Protein kinase domain and PF00560: Leucine Rich Repeat
          Length = 876

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 297 RVEHGAAGGERDAREEVAGEVRQGHQQLRVLVGLRIDARH 178
           +V HG   GE+ A + ++ E  QG+++ R  V L +   H
Sbjct: 587 KVYHGVINGEQVAVKVLSEESAQGYKEFRAEVDLLMRVHH 626


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,101,584
Number of Sequences: 28952
Number of extensions: 199748
Number of successful extensions: 566
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -