Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0010
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49160.1 68416.m05373 pyruvate kinase family protein similar ...    28   6.5  
At5g46120.1 68418.m05672 hypothetical protein                          27   8.6  
At1g70630.1 68414.m08141 expressed protein                             27   8.6  

>At3g49160.1 68416.m05373 pyruvate kinase family protein similar to
           SP|Q92122 Pyruvate kinase, muscle isozyme (EC 2.7.1.40)
           (Cytosolic thyroid hormone binding protein) (CTHBP)
           {Xenopus laevis}; contains Pfam profile PF00224:
           Pyruvate kinase, barrel domain
          Length = 710

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = -3

Query: 216 DLEFMLSH*ASLGLTAPQHRLPN*ILYINASSSLLTAD 103
           D+E + SH ASLGL++  +   + + ++NAS +LL  D
Sbjct: 156 DIEQLNSHLASLGLSSLDNNNLDVLAHLNASINLLMND 193


>At5g46120.1 68418.m05672 hypothetical protein
          Length = 83

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 194 WLNINSKSLQTEPPSLSSRLVQYLDRQI 277
           WL  N K   +EPPS + +++++LDR I
Sbjct: 30  WLERN-KRRHSEPPSTADQVIKFLDRII 56


>At1g70630.1 68414.m08141 expressed protein
          Length = 537

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -2

Query: 214 FRVYVEPLSLPRSNSSTTSTPQLNIIYQRIELPAHCGL 101
           FR   + +SL RS  S +S  ++ + +  I++P HCG+
Sbjct: 73  FRELQKMISL-RSLQSNSSASKMIMAWNNIDMPLHCGV 109


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,868,072
Number of Sequences: 28952
Number of extensions: 272674
Number of successful extensions: 568
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)