Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0003
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21800.2 68417.m03154 ATP-binding family protein contains Pfa...    28   6.7  
At4g21800.1 68417.m03153 ATP-binding family protein contains Pfa...    28   6.7  
At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membr...    28   6.7  
At4g18010.2 68417.m02680 inositol polyphosphate 5-phosphatase II...    27   8.8  
At4g18010.1 68417.m02679 inositol polyphosphate 5-phosphatase II...    27   8.8  
At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family...    27   8.8  
At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family...    27   8.8  

>At4g21800.2 68417.m03154 ATP-binding family protein contains Pfam
           domain, PF03029: Conserved hypothetical ATP binding
           protein
          Length = 379

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/83 (20%), Positives = 34/83 (40%)
 Frame = -3

Query: 570 VILDLNVVVLRTTALIRVVEA*ASLAVYFAIRLPGFVEVCAHHASGVCLVGTVLDAVTHG 391
           ++  LN+   +   ++ V+E  A    Y  +  PG +E+    ASG  +           
Sbjct: 113 ILTSLNLFATKFDEVVSVIEKRADQLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTV 172

Query: 390 VSVFVDFADTSCAAVDFQARVFH 322
           V+  VD    S + + F + + +
Sbjct: 173 VTYVVD-TPRSSSPITFMSNMLY 194


>At4g21800.1 68417.m03153 ATP-binding family protein contains Pfam
           domain, PF03029: Conserved hypothetical ATP binding
           protein
          Length = 379

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/83 (20%), Positives = 34/83 (40%)
 Frame = -3

Query: 570 VILDLNVVVLRTTALIRVVEA*ASLAVYFAIRLPGFVEVCAHHASGVCLVGTVLDAVTHG 391
           ++  LN+   +   ++ V+E  A    Y  +  PG +E+    ASG  +           
Sbjct: 113 ILTSLNLFATKFDEVVSVIEKRADQLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTV 172

Query: 390 VSVFVDFADTSCAAVDFQARVFH 322
           V+  VD    S + + F + + +
Sbjct: 173 VTYVVD-TPRSSSPITFMSNMLY 194


>At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membrane
           protein (PEX10) identical to zinc-binding peroxisomal
           integral membrane protein GI:4337011 from [Arabidopsis
           thaliana]
          Length = 381

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +2

Query: 542 NTTTFKSSITERAEKCLTALKARCLTSPVACGTGFLTSC-ATWLN 673
           N +T  S+ TE   KC   L  R   +   CG  F  SC   W N
Sbjct: 312 NWSTSDSTSTEAVGKCTLCLSTRQHPTATPCGHVFCWSCIMEWCN 356


>At4g18010.2 68417.m02680 inositol polyphosphate 5-phosphatase II
           (IP5PII) nearly identical to inositol polyphosphate
           5-phosphatase II [Arabidopsis thaliana] GI:10444263
           isoform contains an AT-acceptor splice site at intron 6
          Length = 613

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 553 RGGIADHGTDQSCRGISIAGGILR 482
           RG  ADHG + S  G+S+ GG  R
Sbjct: 68  RGSEADHGNNISDGGVSVRGGYQR 91


>At4g18010.1 68417.m02679 inositol polyphosphate 5-phosphatase II
           (IP5PII) nearly identical to inositol polyphosphate
           5-phosphatase II [Arabidopsis thaliana] GI:10444263
           isoform contains an AT-acceptor splice site at intron 6
          Length = 646

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 553 RGGIADHGTDQSCRGISIAGGILR 482
           RG  ADHG + S  G+S+ GG  R
Sbjct: 68  RGSEADHGNNISDGGVSVRGGYQR 91


>At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family
           protein (ROS1) similar to DEMETER protein [Arabidopsis
           thaliana] GI:21743571; contains Pfam profile PF00730:
           HhH-GPD superfamily base excision DNA repair protein
          Length = 1393

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 443 WCAQTSTKPGNRIAKYTASDAYASTTL 523
           W  QT  KP + I  YT  D Y S+ L
Sbjct: 16  WIPQTPMKPFSPICPYTVEDQYHSSQL 42


>At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965;
          Length = 185

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +3

Query: 69  PRDRGHLHRRR*SYAA*APQDPHHDY*TSNVGAARPRG 182
           P    H H RR + AA A Q PHH   T+  G     G
Sbjct: 107 PSPDNHRHHRRTTTAAVAGQPPHHRRTTAAAGTTTIAG 144


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,357,328
Number of Sequences: 28952
Number of extensions: 279505
Number of successful extensions: 864
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)