Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0079
         (456 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22340.2 68417.m03229 phosphatidate cytidylyltransferase, put...    29   1.5  
At4g22340.1 68417.m03230 phosphatidate cytidylyltransferase, put...    29   1.5  

>At4g22340.2 68417.m03229 phosphatidate cytidylyltransferase,
           putative / CDP-diglyceride synthetase, putative similar
           to CDP-diacylglycerol synthetase (CDS) GI:2181182 from
           [Arabidopsis thaliana]
          Length = 365

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 265 TNSSFSIANCDLSNLYFMITCQ*LGSIDIFFYLCNF 158
           T SSF++AN      +F++    +   DIF Y+C F
Sbjct: 135 TQSSFTVANIFEGIFWFLLPASLIVINDIFAYICGF 170


>At4g22340.1 68417.m03230 phosphatidate cytidylyltransferase,
           putative / CDP-diglyceride synthetase, putative similar
           to CDP-diacylglycerol synthetase (CDS) GI:2181182 from
           [Arabidopsis thaliana]
          Length = 423

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 265 TNSSFSIANCDLSNLYFMITCQ*LGSIDIFFYLCNF 158
           T SSF++AN      +F++    +   DIF Y+C F
Sbjct: 193 TQSSFTVANIFEGIFWFLLPASLIVINDIFAYICGF 228


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,788,289
Number of Sequences: 28952
Number of extensions: 136001
Number of successful extensions: 242
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)