Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0078
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38340.1 68418.m04627 disease resistance protein (TIR-NBS-LRR...    28   6.6  
At5g16030.1 68418.m01874 expressed protein                             28   6.6  

>At5g38340.1 68418.m04627 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1059

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 528 SKLKSWGIIRN*NITYALNNTKDYHSERCI*MLLSNDNSLE 650
           S++KSW  +R   ++Y  N  +  H+   I ML SND  ++
Sbjct: 811 SRIKSWSRLRYFVVSYNENLKESPHALDTITMLSSNDTKMQ 851


>At5g16030.1 68418.m01874 expressed protein
          Length = 339

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = +2

Query: 164 HKTQNKTLNITKISATI*NNKYL*TVNSDVVLYKFYEYNKTLVRQVRYDNIYW 322
           HK+  +T N   IS+T  +  Y      D   Y F    K L  +  Y+N  W
Sbjct: 45  HKSSFRTTNFNNISSTASSPGYTLKEEIDPSTYSFTNALKALQAKTMYNNREW 97


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,893,543
Number of Sequences: 28952
Number of extensions: 241965
Number of successful extensions: 350
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)