Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0076
         (538 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21230.1 68417.m03070 protein kinase family protein contains ...    30   0.85 
At4g02210.1 68417.m00298 expressed protein                             30   0.85 
At4g01930.1 68417.m00257 DC1 domain-containing protein contains ...    29   1.5  
At4g02860.1 68417.m00386 phenazine biosynthesis PhzC/PhzF family...    29   2.0  
At1g03210.1 68414.m00299 phenazine biosynthesis PhzC/PhzF family...    29   2.0  
At3g11960.2 68416.m01476 cleavage and polyadenylation specificit...    29   2.6  
At3g11960.1 68416.m01475 cleavage and polyadenylation specificit...    29   2.6  
At5g11300.1 68418.m01319 cyclin, putative (CYC3b) similar to cyc...    27   6.0  
At3g16630.2 68416.m02126 kinesin motor family protein similar to...    27   6.0  
At3g16630.1 68416.m02125 kinesin motor family protein similar to...    27   6.0  

>At4g21230.1 68417.m03070 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 642

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +2

Query: 356 WTFVTCSFRMKFYFLFDRERNLFPTTESQKNVAGHNNWSRLS 481
           WT  +C FR + Y  FD    L  T+E ++ ++ HNN +R S
Sbjct: 226 WTNPSCYFRFEVYPFFD----LSVTSEQKQPLSSHNNNTRRS 263


>At4g02210.1 68417.m00298 expressed protein
          Length = 439

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 344 STYAWTFVTCSFRMKFYFLFDRE 412
           S  AW F++CSF  KF FL+ ++
Sbjct: 42  SKRAWKFMSCSFTAKFKFLYGKD 64


>At4g01930.1 68417.m00257 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 652

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 191 RRVHGNVFNN**LSIIT*ITRP-GCYACDRCHNGF 90
           RR+  +V +N  L+++     P  CYACDR  NGF
Sbjct: 426 RRMKWHVLHNERLTLVINEAEPFRCYACDRWSNGF 460


>At4g02860.1 68417.m00386 phenazine biosynthesis PhzC/PhzF family
           protein contains Pfam profile: PF02567 phenazine
           biosynthesis-like protein
          Length = 294

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -3

Query: 470 TSYCALQHSFEILLLEIDFFPYQKENKTSFEMNKLQMSKRMLRLRDR 330
           +++CAL H + I + + DF  YQ  +++      L   K+ + LR +
Sbjct: 237 SAHCALAHYWSIKMNKFDFLAYQASSRSGTIRIHLDKEKQRVLLRGK 283


>At1g03210.1 68414.m00299 phenazine biosynthesis PhzC/PhzF family
           protein contains Pfam profile: PF02567 phenazine
           biosynthesis-like protein
          Length = 286

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -3

Query: 470 TSYCALQHSFEILLLEIDFFPYQKENKTSFEMNKLQMSKRMLRLRDR 330
           +++CAL H + + + + DFF YQ  ++       L   K+ + LR +
Sbjct: 229 SAHCALAHYWSLRMNKCDFFAYQASSRGGTLKVHLDKEKQRVLLRGK 275


>At3g11960.2 68416.m01476 cleavage and polyadenylation specificity
           factor (CPSF) A subunit C-terminal domain-containing
           protein similar to Splicing factor 3B subunit 3
           (Spliceosome associatedprotein 130) (SAP 130) (SF3b130)
           (Pre-mRNA splicing factor SF3b 130kDa subunit)
           (SP:Q15393) [Homo sapiens]; contains Pfam PF03178 : CPSF
           A subunit region
          Length = 1329

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +2

Query: 263 IDPDLIMLIINKWLLETGFQHVIYPVASTYAWTFVT--CSFRMKFYFLFDRERNL 421
           +D D+I L    WLL+T  Q + Y   S    T  T  CSF      LF  E  L
Sbjct: 778 LDSDIIALSDRPWLLQTARQSLSYTSISFQPSTHATPVCSFECPQGILFVSENCL 832


>At3g11960.1 68416.m01475 cleavage and polyadenylation specificity
            factor (CPSF) A subunit C-terminal domain-containing
            protein similar to Splicing factor 3B subunit 3
            (Spliceosome associatedprotein 130) (SAP 130) (SF3b130)
            (Pre-mRNA splicing factor SF3b 130kDa subunit)
            (SP:Q15393) [Homo sapiens]; contains Pfam PF03178 : CPSF
            A subunit region
          Length = 1379

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +2

Query: 263  IDPDLIMLIINKWLLETGFQHVIYPVASTYAWTFVT--CSFRMKFYFLFDRERNL 421
            +D D+I L    WLL+T  Q + Y   S    T  T  CSF      LF  E  L
Sbjct: 836  LDSDIIALSDRPWLLQTARQSLSYTSISFQPSTHATPVCSFECPQGILFVSENCL 890


>At5g11300.1 68418.m01319 cyclin, putative (CYC3b) similar to cyclin
           3a [Arabidopsis thaliana] GI:509425; contains Pfam
           profiles PF00134: Cyclin, N-terminal domain, PF02984:
           Cyclin, C-terminal domain; identical to cDNA cyc3b mRNA
           for cyclin 3b protein GI:728520
          Length = 436

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 242 MPTCMRDIDPDLIMLIINKWLLETGFQHVIYP 337
           M    RDIDPD+  ++I+ WL+E    + + P
Sbjct: 194 MELVQRDIDPDMRKILID-WLVEVSDDYKLVP 224


>At3g16630.2 68416.m02126 kinesin motor family protein similar to
           mitotic centromere-associated kinesin GB:AAC27660 from
           [Homo sapiens]; contains Pfam profile PF00225: Kinesin
           motor domain
          Length = 794

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 287 IINKWLLETGFQHVIYPVAST 349
           ++ +WL   G QH+  PVAST
Sbjct: 30  VMARWLQSAGLQHLASPVAST 50


>At3g16630.1 68416.m02125 kinesin motor family protein similar to
           mitotic centromere-associated kinesin GB:AAC27660 from
           [Homo sapiens]; contains Pfam profile PF00225: Kinesin
           motor domain
          Length = 794

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 287 IINKWLLETGFQHVIYPVAST 349
           ++ +WL   G QH+  PVAST
Sbjct: 30  VMARWLQSAGLQHLASPVAST 50


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,238,278
Number of Sequences: 28952
Number of extensions: 188236
Number of successful extensions: 374
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)