Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0072
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g20860.1 68417.m03026 FAD-binding domain-containing protein s...    28   6.9  
At1g18130.1 68414.m02248 tRNA synthetase-related / tRNA ligase-r...    28   6.9  

>At4g20860.1 68417.m03026 FAD-binding domain-containing protein
           simlar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 530

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 362 IILCHK*DKSDAHVEFFKNKILTREFNSMLKN 457
           ++LC K   S    E F+N + T++FNS LKN
Sbjct: 13  LVLCVKSVYSTPTREQFQNCLSTKQFNSTLKN 44


>At1g18130.1 68414.m02248 tRNA synthetase-related / tRNA
           ligase-related similar to SP|O04630 Threonyl-tRNA
           synthetase, mitochondrial precursor (EC 6.1.1.3)
           (Threonine--tRNA ligase) (ThrRS) {Arabidopsis thaliana};
           contains Pfam profile PF03129: Anticodon binding domain
          Length = 165

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -1

Query: 391 RFISFMTKYYRIKLNVIISPKDMLICSVPTCNNRKYIDAK*NTSMNNASSYVNV 230
           R  + + + Y+ K    +SP+  ++CSV   + R Y D K    ++ A  YV+V
Sbjct: 53  RLFAILLEQYKGKFPFWLSPRQAIVCSVSE-DYRSYAD-KVRDQIHEAGYYVDV 104


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,003,932
Number of Sequences: 28952
Number of extensions: 221173
Number of successful extensions: 322
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)