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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0056
         (558 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g15420.1 68415.m01764 myosin heavy chain-related                    29   2.1  
At5g03960.1 68418.m00376 calmodulin-binding family protein             29   2.8  
At4g20850.1 68417.m03025 subtilase family protein contains simil...    28   3.7  
At3g11850.2 68416.m01453 expressed protein contains Pfam profile...    28   3.7  
At3g11850.1 68416.m01452 expressed protein contains Pfam profile...    28   3.7  
At2g25250.1 68415.m03021 expressed protein                             28   3.7  
At2g19090.1 68415.m02229 expressed protein contains Pfam profile...    28   3.7  
At4g31160.1 68417.m04423 transducin family protein / WD-40 repea...    28   4.9  
At4g10340.1 68417.m01699 chlorophyll A-B binding protein CP26, c...    27   6.4  
At5g60490.1 68418.m07586 fasciclin-like arabinogalactan-protein ...    27   8.5  
At4g37840.1 68417.m05353 hexokinase, putative similar to hexokin...    27   8.5  
At3g60380.1 68416.m06753 expressed protein                             27   8.5  
At1g32490.1 68414.m04009 RNA helicase, putative similar to ATP-d...    27   8.5  

>At2g15420.1 68415.m01764 myosin heavy chain-related
          Length = 957

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -1

Query: 246 TRP-AHVSTRRPADCTAVSQTASKLGL-SKKFSLVYSSKPHGS*FC 115
           TRP + +  RR  DC+AV      LGL +  F  V +   HGS  C
Sbjct: 348 TRPVSRIEERRTGDCSAVRGRQIVLGLRASYFERVVAPLDHGSSLC 393


>At5g03960.1 68418.m00376 calmodulin-binding family protein
          Length = 403

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
 Frame = -3

Query: 517 HFTKSVCFWVSSSSARISGSTHMSRKILCSILTALVLLEGLLRNEDPHQNLSSHSIPAPS 338
           HF K +   V++   + +    ++RK L + L ALV L+ ++R     + +S+    + S
Sbjct: 99  HFVKKLAPNVAAIKIQSAFRASLARKALRA-LKALVRLQAIVRGRAVRRKVSALLKSSHS 157

Query: 337 NKTNVTEILLR---RFQFHSYNKFV*STYNVGGHSPC 236
           NK + + I+ R   R  + +    +     V  HS C
Sbjct: 158 NKASTSNIIQRQTERKHWSNTKSEIKEELQVSNHSLC 194


>At4g20850.1 68417.m03025 subtilase family protein contains similarity
            to Tripeptidyl-peptidase II (EC 3.4.14.10) (TPP-II)
            (Tripeptidyl aminopeptidase) (Swiss-Prot:P29144) [Homo
            sapiens]
          Length = 1380

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 508  KSVCFWVSSSSARISGSTHMSRKILCSILTALVLLEGLLRNEDPHQN 368
            K +  WV   S++    T +  K L  + TAL +L+ L++NE+   N
Sbjct: 1296 KELTKWVDVKSSKYGTLTVLREKRLSRLGTALKVLDDLIQNENETAN 1342


>At3g11850.2 68416.m01453 expressed protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593
          Length = 504

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +1

Query: 412 QGPSRCCRGSCATCGWIPRSWPNSTRPRNKRSL 510
           + P +CC   C  C   P SW  S + R    L
Sbjct: 2   ESPIKCCDCGCDCCSSSPGSWIRSVKKRRHDEL 34


>At3g11850.1 68416.m01452 expressed protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593
          Length = 504

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +1

Query: 412 QGPSRCCRGSCATCGWIPRSWPNSTRPRNKRSL 510
           + P +CC   C  C   P SW  S + R    L
Sbjct: 2   ESPIKCCDCGCDCCSSSPGSWIRSVKKRRHDEL 34


>At2g25250.1 68415.m03021 expressed protein
          Length = 155

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 391 RNEDPHQNLSSHSIPAPSNKTNVTEILLR 305
           R+   HQ+  SH  P+P N TN   IL R
Sbjct: 36  RSPSSHQSQISHPPPSPHNHTNHVRILKR 64


>At2g19090.1 68415.m02229 expressed protein contains Pfam profiles:
           PF04782 protein of unknown function (DUF632), PF04783
           protein of unknown function (DUF630); expression
           supported by MPSS
          Length = 814

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -3

Query: 379 PHQNLSSHSIPAPSNKTNVTEILLRRF---QFHSYNKF 275
           P Q LSSH+IP PS + +  +     F    ++ YN +
Sbjct: 184 PEQRLSSHNIPPPSPQNSQWDFFWNPFSSLDYYGYNSY 221


>At4g31160.1 68417.m04423 transducin family protein / WD-40 repeat
            family protein contains 2 WD-40 repeats (PF00400);
            KIAA0800 protein, Homo sapiens GI:3882321 EMBL:AB018343
          Length = 1846

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = -2

Query: 461  IHPHVAQDPLQHLDGPC-VTGRATEKRRSASKPLKSQHPGSVK*DQRDRNFI 309
            +HPHV  +P + L+ P  +TGR        ++ L+S + G V  ++RDR F+
Sbjct: 1371 LHPHVCPEPKRLLEAPLNMTGRL------GTRELQSFYSG-VHGNRRDRQFV 1415


>At4g10340.1 68417.m01699 chlorophyll A-B binding protein CP26,
           chloroplast / light-harvesting complex II protein 5 /
           LHCIIc (LHCB5) identical to SP|Q9XF89 Chlorophyll
           A/B-binding protein CP26, chloroplast precursor
           (Light-harvesting complex II protein 5) (LHCB5) (LHCIIc)
           {Arabidopsis thaliana}; contains Pfam profile: PF00504
           chlorophyll A-B binding protein; chlorophyll a/b-binding
           protein CP26 in PS II, Brassica juncea, gb:X95727
          Length = 280

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 449 HVGGSRDPGRTRRDPETNALCKMRE 523
           H GG  DP    +DPE  AL K++E
Sbjct: 201 HPGGPFDPLGLAKDPEQGALLKVKE 225


>At5g60490.1 68418.m07586 fasciclin-like arabinogalactan-protein
           (FLA12)
          Length = 249

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = -3

Query: 439 ILCSILTALVLLEGLLRNEDPHQNLSSHSIPAPSNKTNVTEILLRRFQFHSYNKFV*ST 263
           +L ++L  L    G+L    P         PAP   TNVT+IL +  QF  + + + ST
Sbjct: 8   LLFTVLLLLTTTPGILSQPSPAV------APAPPGPTNVTKILEKAGQFTVFIRLLKST 60


>At4g37840.1 68417.m05353 hexokinase, putative similar to hexokinase
           1 [Spinacia oleracea] Swiss-Prot:Q9SEK3
          Length = 493

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 415 LVLLEGLLR-NEDPHQNLSSHSIPAPSNKTN 326
           L+LL G L  NE+P  ++  H IP P +  N
Sbjct: 108 LLLLRGTLGGNEEPISDVQKHEIPIPDDVLN 138


>At3g60380.1 68416.m06753 expressed protein 
          Length = 743

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 434 EDLARHVGGSRDPGRTRRDPETNALCKMREEQVRR 538
           E ++  VGG+ D    R+D +  + C + EE +R+
Sbjct: 446 ESISSPVGGADDSTTRRQDLQQKSNCHLLEENIRK 480


>At1g32490.1 68414.m04009 RNA helicase, putative similar to
           ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
           contains Pfam profiles PF04408: Helicase associated
           domain (HA2), PF00271: Helicase conserved C-terminal
           domain
          Length = 1044

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 422 QDAAEDLARHVGGSRDPGRTRRDPETNALCKMREEQVRR 538
           Q   E+L +H+   RD  RTR+  E     K +EE VRR
Sbjct: 172 QKEREELEQHLK-DRDTARTRKLTEQTLSKKEKEEAVRR 209


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,858,862
Number of Sequences: 28952
Number of extensions: 239437
Number of successful extensions: 652
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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