Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0047
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger) fa...    29   2.0  
At1g28220.1 68414.m03464 purine permease, putative similar to pu...    29   2.7  
At4g11190.1 68417.m01812 disease resistance-responsive family pr...    27   8.2  
At1g59453.1 68414.m06679 transcription factor-related weak simil...    27   8.2  

>At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 683

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = -1

Query: 373 ISSRLWERRIRTILRMNRISKRSMRLKHTLTNNRRPCRRLVTEIDIITSVRRVG 212
           + S L E    +I+  +  SKR   L+    N RR  RR+V  I +  SV  VG
Sbjct: 328 VLSNLREMDRLSIIAFSSSSKRLSPLRRMTANGRRSARRIVDIITVPGSVSGVG 381


>At1g28220.1 68414.m03464 purine permease, putative similar to
           purine permease GI:7620007 from [Arabidopsis thaliana]
          Length = 351

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -2

Query: 606 YFYIRVNISFTVKKNLSFFILVPKLLLSGIMYGIL 502
           + YI    S  V  + SFF++ P+LL++ ++ GIL
Sbjct: 55  FSYITRRRSNNVGDSTSFFLIKPRLLIAAVIVGIL 89


>At4g11190.1 68417.m01812 disease resistance-responsive family
           protein / dirigent family protein similar to dirigent
           protein [Forsythia x intermedia] gi|6694693|gb|AAF25357;
           similar to disease resistance response protein 206-d
           [Pisum sativum] gi|508844|gb|AAB18669
          Length = 184

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 607 VLLYQSKY*FHCKKKFELFYPCPQIITVWHNV 512
           VLLYQS      ++ F L  PC + +   HNV
Sbjct: 15  VLLYQSTTVLSFRQPFNLAKPCKRFVFYLHNV 46


>At1g59453.1 68414.m06679 transcription factor-related weak similarity
            to TFIIIC Box B-binding subunit [Homo sapiens] GI:442362
          Length = 1729

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = -1

Query: 355  ERRIRTILRMNRISKRSMRLKHTLTNNRRPCRRLVTEIDII 233
            +RRI+T++R +++ K  MRL + L  + R  + L TE D +
Sbjct: 1059 KRRIQTMMRNDKVRKAVMRLCNLL--SERYAKHLKTESDSV 1097


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,592,421
Number of Sequences: 28952
Number of extensions: 276428
Number of successful extensions: 478
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)