Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0046
         (569 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31120.2 68417.m04418 Skb1 methyltransferase family protein c...    63   1e-10
At4g31120.1 68417.m04417 Skb1 methyltransferase family protein c...    63   1e-10
At4g21770.1 68417.m03150 pseudouridine synthase family protein c...    30   1.2  
At5g57970.1 68418.m07253 methyladenine glycosylase family protei...    29   1.7  
At2g35710.2 68415.m04379 glycogenin glucosyltransferase (glycoge...    28   3.8  
At2g35710.1 68415.m04380 glycogenin glucosyltransferase (glycoge...    28   3.8  
At3g53160.1 68416.m05858 UDP-glucoronosyl/UDP-glucosyl transfera...    27   8.8  
At2g26440.1 68415.m03172 pectinesterase family protein contains ...    27   8.8  

>At4g31120.2 68417.m04418 Skb1 methyltransferase family protein
           contains Pfam profile:  PF05185 Skb1 methyltransferase
          Length = 584

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 7/169 (4%)
 Frame = +1

Query: 58  YSFIVSPIIHPRFRRQSTNAGKNGGFTR------SDMVLSPQDWTSRIVAKLSPYINVDS 219
           + ++++P++ P +R        NG  T+      SD+VLSP  W+S +V K+S +I++DS
Sbjct: 40  FDYVLAPLVDPSYRPSLVEG--NGVDTQVLPVCGSDLVLSPSQWSSHVVGKISSWIDLDS 97

Query: 220 PSATVRQRHEDYLNEELSYCRGLGVPAIMI-SIHGRESNNLARILQTYYETSHHPSLIWA 396
               +R   E  L +E+++   L + A ++ +  G+   N AR +    +      L W 
Sbjct: 98  EDEVLRMDSETTLKQEIAWATHLSLQACLLPTPKGKSCANYARCVNQILQGLTTLQL-WL 156

Query: 397 CVPMLCSRTYXXXXXXXXXXKAWNEPWYWWSKFHERLDWDKRVGVVLEL 543
            VP++ S             +  N+ W  W+ F    + D ++ V L++
Sbjct: 157 RVPLVKSE----GDSMDDTSEGLNDSWELWNSFRLLCEHDSKLSVALDV 201


>At4g31120.1 68417.m04417 Skb1 methyltransferase family protein
           contains Pfam profile:  PF05185 Skb1 methyltransferase
          Length = 642

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 7/169 (4%)
 Frame = +1

Query: 58  YSFIVSPIIHPRFRRQSTNAGKNGGFTR------SDMVLSPQDWTSRIVAKLSPYINVDS 219
           + ++++P++ P +R        NG  T+      SD+VLSP  W+S +V K+S +I++DS
Sbjct: 40  FDYVLAPLVDPSYRPSLVEG--NGVDTQVLPVCGSDLVLSPSQWSSHVVGKISSWIDLDS 97

Query: 220 PSATVRQRHEDYLNEELSYCRGLGVPAIMI-SIHGRESNNLARILQTYYETSHHPSLIWA 396
               +R   E  L +E+++   L + A ++ +  G+   N AR +    +      L W 
Sbjct: 98  EDEVLRMDSETTLKQEIAWATHLSLQACLLPTPKGKSCANYARCVNQILQGLTTLQL-WL 156

Query: 397 CVPMLCSRTYXXXXXXXXXXKAWNEPWYWWSKFHERLDWDKRVGVVLEL 543
            VP++ S             +  N+ W  W+ F    + D ++ V L++
Sbjct: 157 RVPLVKSE----GDSMDDTSEGLNDSWELWNSFRLLCEHDSKLSVALDV 201


>At4g21770.1 68417.m03150 pseudouridine synthase family protein
           contains Pfam profile PF00849: RNA pseudouridylate
           synthase
          Length = 472

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +1

Query: 166 DWTSRIVAKLSPYINVDSPSATVRQRHEDYLNEELS--YCRGLGVPAIMISIH 318
           DW SRIVA    Y+ +D P+ T      D + E  +    R L +P  + + H
Sbjct: 206 DWKSRIVAVTDSYVILDKPAGTTVGGTTDNIEESCATFASRALDLPEPLKTTH 258


>At5g57970.1 68418.m07253 methyladenine glycosylase family protein
           similar to SP|P05100 DNA-3-methyladenine glycosylase I
           (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
           constitutive) {Escherichia coli}; contains Pfam profile
           PF03352: Methyladenine glycosylase
          Length = 347

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 223 SATVRQRHEDYLNEELSYCRGLGVPAIMISIHGRESNNLARILQTY 360
           +A++ +RHE  LN  LS        A M S H R S    R++++Y
Sbjct: 78  AASILRRHEQNLNSNLSLNASFSSDASMDSFHSRAST--GRLIRSY 121


>At2g35710.2 68415.m04379 glycogenin glucosyltransferase
           (glycogenin)-related low similarity to glycogenin-2 from
           Homo sapiens [SP|O15488]
          Length = 389

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 463 WNEPWYWWS 489
           W +PWYWWS
Sbjct: 183 WLKPWYWWS 191


>At2g35710.1 68415.m04380 glycogenin glucosyltransferase
           (glycogenin)-related low similarity to glycogenin-2 from
           Homo sapiens [SP|O15488]
          Length = 497

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 463 WNEPWYWWS 489
           W +PWYWWS
Sbjct: 291 WLKPWYWWS 299


>At3g53160.1 68416.m05858 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 490

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = +1

Query: 382 SLIWACVPMLCSRTYXXXXXXXXXXKAWNEPWYW----WSKFHERLDWDKRVG 528
           S+++ C+  LC+             +A N+P+ W    W K+ +  +W ++ G
Sbjct: 283 SVLYVCLGSLCNLPLAQLKELGLGLEASNKPFIWVIREWGKYGDLANWMQQSG 335


>At2g26440.1 68415.m03172 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 547

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 419 EHIXNALKMMKKRKLGMSPGTGGPNSMSALIGI 517
           +HI N+L  + K++   +P TGG      L+G+
Sbjct: 177 KHISNSLSALPKQRRTTNPKTGGNTKNRRLLGL 209


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,750,076
Number of Sequences: 28952
Number of extensions: 254783
Number of successful extensions: 567
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)