Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0039
         (395 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g22425.1 68415.m02659 expressed protein weak similarity to Sw...    38   0.002
At4g40042.1 68417.m05669 expressed protein                             37   0.004
At1g19720.1 68414.m02463 pentatricopeptide (PPR) repeat-containi...    27   3.4  
At5g16350.1 68418.m01911 expressed protein                             27   4.5  
At3g44970.1 68416.m04845 cytochrome P450 family protein similar ...    26   7.9  

>At2g22425.1 68415.m02659 expressed protein weak similarity to
           Swiss-Prot:Q9Y6A9 microsomal signal peptidase 12 kDa
           subunit (SPase 12 kDa subunit, SPC12, HSPC033) [Homo
           sapiens]
          Length = 92

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +1

Query: 82  EKLYRAIITLFSIVGFVWGYIVQQFSQSVYXXXXXXXXXXXXTVPPWPMYRRNPLNW 252
           E+L + ++ +  +V  V GY  + F   +             TVP WP Y  +PL W
Sbjct: 10  EQLMQILLVISGVVAVVVGYTTESFRTMMLIYAGGVVLTTLVTVPNWPFYNLHPLKW 66


>At4g40042.1 68417.m05669 expressed protein
          Length = 155

 Score = 37.1 bits (82), Expect = 0.004
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +1

Query: 82  EKLYRAIITLFSIVGFVWGYIVQQFSQSVYXXXXXXXXXXXXTVPPWPMYRRNPLNW 252
           E+L + ++ + ++V FV GY    F   +             T+P WP + R+ L W
Sbjct: 72  EQLMQILLLIAAVVSFVVGYTTASFRMMMLIYAGGVVLTTLITIPNWPCFNRHHLKW 128


>At1g19720.1 68414.m02463 pentatricopeptide (PPR) repeat-containing
           protein nearly identical over 405 amino acids to DYW7
           protein of unknown function GB:CAA06829 from
           [Arabidopsis thaliana] (Plant Mol. Biol. 42 (4), 603-613
           (2000)); contains Pfam profile PF01535: PPR repeat
          Length = 894

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -1

Query: 179 PRIYTDCENC*TI*PHTKPTILNNVIIALYNFSCFCLSDVIYVGWYRCKEIHLA 18
           P+I   C NC  +       ++++V+I L   SC  +S+ I   + +C E+  A
Sbjct: 185 PKILQGCANCGDV---EAGKVIHSVVIKLGMSSCLRVSNSILAVYAKCGELDFA 235


>At5g16350.1 68418.m01911 expressed protein
          Length = 488

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 358 AYI*EVKVVQTNFEIMDFTSFLSWLLVCHHRS*EP 254
           +Y   V V++ N  + D  SF+S +L C H++  P
Sbjct: 123 SYAEAVGVIRFNHALADGMSFISLVLACTHKTSNP 157


>At3g44970.1 68416.m04845 cytochrome P450 family protein similar to
           Cytochrome P450 85 (SP:Q43147) {Lycopersicon
           esculentum}; contains Pfam profile: PF00067 cytochrome
           P450
          Length = 479

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -3

Query: 255 LPVQRIASVHWPWRNSKNGSKQKSGTKNIH*LRELLNYITPY 130
           L V R+    + W N K+  K   G+     + E L++  PY
Sbjct: 14  LVVARVGHWWYQWSNPKSNGKLPPGSMGFPIIGETLDFFKPY 55


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,521,037
Number of Sequences: 28952
Number of extensions: 137845
Number of successful extensions: 361
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)