Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0035
(652 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 320 5e-88
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 320 5e-88
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 320 5e-88
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 320 5e-88
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 141 4e-34
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 101 3e-22
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 80 1e-15
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 67 1e-11
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 63 2e-10
At4g27900.2 68417.m04005 expressed protein 32 0.38
At4g27900.1 68417.m04004 expressed protein 32 0.38
At4g18180.1 68417.m02701 glycoside hydrolase family 28 protein /... 29 2.7
At4g29900.1 68417.m04254 calcium-transporting ATPase, plasma mem... 29 3.5
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 29 3.5
At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote... 28 4.7
At5g13580.1 68418.m01570 ABC transporter family protein 27 8.2
At5g07670.1 68418.m00878 F-box family protein similar to unknown... 27 8.2
At4g01910.1 68417.m00251 DC1 domain-containing protein contains ... 27 8.2
At1g35610.1 68414.m04421 DC1 domain-containing protein contains ... 27 8.2
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 320 bits (786), Expect = 5e-88
Identities = 143/195 (73%), Positives = 173/195 (88%)
Frame = +1
Query: 4 LPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDN 183
LPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP +TTEVKSVEMHHE+L EA+PGDN
Sbjct: 236 LPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDN 295
Query: 184 VGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAH 363
VGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QVI++NHPGQI NGY PVLDCHT+H
Sbjct: 296 VGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSH 355
Query: 364 IACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 543
IA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVR
Sbjct: 356 IAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVR 415
Query: 544 DMRQTVAVGVIKAVN 588
DMRQTVAVGVIK+V+
Sbjct: 416 DMRQTVAVGVIKSVD 430
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 320 bits (786), Expect = 5e-88
Identities = 143/195 (73%), Positives = 173/195 (88%)
Frame = +1
Query: 4 LPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDN 183
LPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP +TTEVKSVEMHHE+L EA+PGDN
Sbjct: 236 LPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDN 295
Query: 184 VGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAH 363
VGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QVI++NHPGQI NGY PVLDCHT+H
Sbjct: 296 VGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSH 355
Query: 364 IACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 543
IA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVR
Sbjct: 356 IAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVR 415
Query: 544 DMRQTVAVGVIKAVN 588
DMRQTVAVGVIK+V+
Sbjct: 416 DMRQTVAVGVIKSVD 430
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 320 bits (786), Expect = 5e-88
Identities = 143/195 (73%), Positives = 173/195 (88%)
Frame = +1
Query: 4 LPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDN 183
LPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP +TTEVKSVEMHHE+L EA+PGDN
Sbjct: 236 LPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDN 295
Query: 184 VGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAH 363
VGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QVI++NHPGQI NGY PVLDCHT+H
Sbjct: 296 VGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSH 355
Query: 364 IACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 543
IA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVR
Sbjct: 356 IAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVR 415
Query: 544 DMRQTVAVGVIKAVN 588
DMRQTVAVGVIK+V+
Sbjct: 416 DMRQTVAVGVIKSVD 430
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 320 bits (786), Expect = 5e-88
Identities = 143/195 (73%), Positives = 173/195 (88%)
Frame = +1
Query: 4 LPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDN 183
LPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP +TTEVKSVEMHHE+L EA+PGDN
Sbjct: 236 LPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDN 295
Query: 184 VGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAH 363
VGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QVI++NHPGQI NGY PVLDCHT+H
Sbjct: 296 VGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSH 355
Query: 364 IACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 543
IA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVR
Sbjct: 356 IAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVR 415
Query: 544 DMRQTVAVGVIKAVN 588
DMRQTVAVGVIK+V+
Sbjct: 416 DMRQTVAVGVIKSVD 430
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 141 bits (341), Expect = 4e-34
Identities = 61/95 (64%), Positives = 77/95 (81%)
Frame = +1
Query: 301 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVP 480
+NH GQI NGYTPVLDCHT+HIA KF+EI K+D RTG E PK +K+ +AAI+N+ P
Sbjct: 1 MNHLGQIKNGYTPVLDCHTSHIAVKFSEILTKIDWRTGHEIEKEPKFLKNSEAAIINMTP 60
Query: 481 SKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 585
+KP+ VE++ +PPLGRFA+RDMRQTV VGVIK+V
Sbjct: 61 TKPMVVEAYSAYPPLGRFAIRDMRQTVGVGVIKSV 95
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 101 bits (243), Expect = 3e-22
Identities = 54/193 (27%), Positives = 101/193 (52%), Gaps = 2/193 (1%)
Frame = +1
Query: 4 LPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDN 183
+P+ D +K +GTV +G+VE+G ++ G +V P +V ++ + ++ A PG+N
Sbjct: 333 MPIIDKFK--DMGTVVMGKVESGSIREGDSLVVMPNKEQVKVVAIYCDEDKVKRAGPGEN 390
Query: 184 VGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN--HPGQISNGYTPVLDCHT 357
+ + + +++ G+V S NP +F AQ+ +L + GY +L H
Sbjct: 391 LRVRITGIEDEDILSGFVLS-SIVNPVPAVTEFVAQLQILELLDNAIFTAGYKAILHIHA 449
Query: 358 AHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFA 537
C+ E+K ++D +T K + +K+G A + + + +C+E F +FP LGRF
Sbjct: 450 VVEECEIIELKSQIDLKTRKPMKKKVLFVKNGAAVVCRIQVTNSICIEKFSDFPQLGRFT 509
Query: 538 VRDMRQTVAVGVI 576
+R +T+AVG +
Sbjct: 510 LRTEGKTIAVGKV 522
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 79.8 bits (188), Expect = 1e-15
Identities = 51/195 (26%), Positives = 93/195 (47%), Gaps = 1/195 (0%)
Frame = +1
Query: 4 LPLQDVYKIGGIGTVPV-GRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGD 180
+P+ D + G V G++E G ++PG+ V+ P+ ++S+E +A A GD
Sbjct: 470 MPICDAVRSTSQGQVSACGKLEAGAVRPGSKVMVMPSGDQGTIRSLERDSQACTIARAGD 529
Query: 181 NVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTA 360
NV ++ + ++ G V + P A V+VL I G H A
Sbjct: 530 NVALALQGIDANQVMAGDVLCHP-DFPVSVATHLELMVLVLEGATPILLGSQLEFHVHHA 588
Query: 361 HIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAV 540
A ++ +D +TG+ T+ +P+ + + +A++ + P+CVE+F E LGR +
Sbjct: 589 KEAATVVKLVAMLDPKTGQPTKKSPRCLTAKQSAMLEVSLQNPVCVETFSESRALGRVFL 648
Query: 541 RDMRQTVAVGVIKAV 585
R +TVA+G + +
Sbjct: 649 RSSGRTVAMGKVTRI 663
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 66.9 bits (156), Expect = 1e-11
Identities = 57/199 (28%), Positives = 84/199 (42%), Gaps = 5/199 (2%)
Frame = +1
Query: 4 LPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTE--VKSVEMHHEALQEAVPG 177
L ++DV+ I G GTV GRVE G +K G V T V VEM + L EA+ G
Sbjct: 290 LAVEDVFSITGRGTVATGRVERGTVKVGETVDLVGLRETRSYTVTGVEMFQKILDEALAG 349
Query: 178 DNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQIS---NGYTPVLD 348
DNVG ++ + +++RG V + P + V+ G+ S GY P
Sbjct: 350 DNVGLLLRGIQKADIQRGMVLAKPGSITPHTKFEAIIYVLKKEEGGRHSPFFAGYRPQFY 409
Query: 349 CHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLG 528
T + K +I D + K + GD + + P+ E
Sbjct: 410 MRTTDVTGKVTKIMNDKDEES--------KMVMPGDRVKIVVELIVPVACEQGM------ 455
Query: 529 RFAVRDMRQTVAVGVIKAV 585
RFA+R+ +TV GVI +
Sbjct: 456 RFAIREGGKTVGAGVIGTI 474
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 62.9 bits (146), Expect = 2e-10
Identities = 59/201 (29%), Positives = 91/201 (45%), Gaps = 7/201 (3%)
Frame = +1
Query: 4 LPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVF-----APANITTEVKSVEMHHEALQEA 168
+P++DV+ I G GTV GR+E GV+K G V + + V VEM + L
Sbjct: 270 MPIEDVFSIQGRGTVATGRIEQGVIKVGEEVEILGLREGGVPLKSTVTGVEMFKKILDNG 329
Query: 169 VPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLD 348
GDNVG ++ + ++++RG V +K K F A++ VL +T
Sbjct: 330 QAGDNVGLLLRGLKREDIQRGMVI--AKPGSCKTYKKFEAEIYVLTK--DEGGRHTAFFS 385
Query: 349 CHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGD--AAIVNLVPSKPLCVESFQEFPP 522
+ + A+I KV+ N K + GD A+ L+ PL E+ Q
Sbjct: 386 NYRPQFYLRTADITGKVE------LPENVKMVMPGDNVTAVFELIMPVPL--ETGQ---- 433
Query: 523 LGRFAVRDMRQTVAVGVIKAV 585
RFA+R+ +TV GV+ V
Sbjct: 434 --RFALREGGRTVGAGVVSKV 452
>At4g27900.2 68417.m04005 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.38
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 433 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 525
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At4g27900.1 68417.m04004 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.38
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 433 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 525
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At4g18180.1 68417.m02701 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
polygalacturonase [Salix gilgiana] GI:6714524; contains
PF00295: Glycosyl hydrolases family 28
(polygalacturonases)
Length = 414
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = -2
Query: 435 WVDFSRFTSTTVNFFFDFCKFAGNVGSVAIQDWCVTV*DLTRMVKHNDLSCKICSTLRWV 256
W + +S++VN +F+ VGS+ C V +LT VK + K S W+
Sbjct: 58 WDKACKSSSSSVNLIIPRGEFS--VGSLRFSGPCTNVSNLTVRVKASTDLSKYRSGGGWI 115
Query: 255 VFGVTSNITTT 223
FG + +T T
Sbjct: 116 QFGWINGLTLT 126
>At4g29900.1 68417.m04254 calcium-transporting ATPase, plasma
membrane-type, putative / Ca2+-ATPase, putative (ACA10)
identical to SP|Q9SZR1 Potential calcium-transporting
ATPase 10, plasma membrane-type (EC 3.6.3.8)
(Ca(2+)-ATPase isoform 10) {Arabidopsis thaliana};
similar to SP|Q9LF79 Calcium-transporting ATPase 8,
plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform
8) {Arabidopsis thaliana}
Length = 1069
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 173 GTASWRASWCISTDLTSVVMLAGAKTTMVPGFNT 72
G + WR W S DLT ++++ A ++ G T
Sbjct: 178 GRSFWRFVWEASQDLTLIILIVAAVASLALGIKT 211
>At1g27900.1 68414.m03419 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 700
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = -3
Query: 194 LKPTLSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFNTP 69
L+P+LS + C+S LT V ML+ A+TT++P + P
Sbjct: 428 LEPSLSRTLIEANETGCLSQALTVVAMLS-AETTLLPARSKP 468
>At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein
similar to cell death suppressor protein lls1 from Zea
mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 536
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 373 KFAEIKEKVDRRTGKSTEVNPKSI 444
+F + KEK+DR GK E+N K +
Sbjct: 258 RFPKPKEKIDREGGKPLEINVKKL 281
>At5g13580.1 68418.m01570 ABC transporter family protein
Length = 727
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 143 ISTDLTSVVMLAGAKTTMVPGFNTPVSTLPTGTVP 39
IS ++ +++GA TT ++PVST+PT P
Sbjct: 384 ISASISKGKLVSGATTTTHSSGSSPVSTIPTFANP 418
>At5g07670.1 68418.m00878 F-box family protein similar to unknown
protein (pir||C71419) ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 476
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Frame = -2
Query: 282 KICSTLRWVVF----GVTSNITTTQFLDGHV--LYVETYIVSRYSFLESFVVHLHRLD 127
K+C R +VF G+ ++I + G V LY+E + S LES ++H H L+
Sbjct: 360 KMCEAAREIVFQDCWGLDNDIFSLAMAFGRVKLLYLEGCSLLTTSGLESVILHWHELE 417
>At4g01910.1 68417.m00251 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 651
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 72 CVETRYHCCLCPRQHHY*SQVC 137
C R+HC LC R+ +Y S C
Sbjct: 73 CSNLRFHCDLCGRRTNYLSYYC 94
>At1g35610.1 68414.m04421 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 612
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -1
Query: 88 YLVSTHQFQLCRRARYQYHRFCIRLA 11
Y + +HQF C++ Y H C L+
Sbjct: 334 YPIVSHQFYHCKKCNYSLHEVCAGLS 359
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.135 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,227,881
Number of Sequences: 28952
Number of extensions: 338050
Number of successful extensions: 1086
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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