Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0026
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containi...    29   2.2  
At2g44930.1 68415.m05593 expressed protein contains Pfam profile...    29   2.9  
At4g32690.1 68417.m04653 2-on-2 hemoglobin (GLB3) identical to 2...    28   5.1  
At4g28800.1 68417.m04118 bHLH family protein contains Pfam profi...    28   5.1  
At4g30230.1 68417.m04299 hypothetical protein                          28   6.8  
At5g64650.1 68418.m08125 ribosomal protein L17 family protein co...    27   8.9  
At5g46130.1 68418.m05673 hypothetical protein contains Pfam prof...    27   8.9  
At5g09770.1 68418.m01131 ribosomal protein L17 family protein co...    27   8.9  
At2g40230.1 68415.m04947 transferase family protein similar to t...    27   8.9  

>At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containing
           protein low similarity to CRP1 [Zea mays] GI:3289002;
           contains Pfam profile PF01535: PPR repeat
          Length = 793

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 257 HGPQNKSIIADVKGTIVRQRYHTEHPFDVWS 349
           HG   K+++++ K   V  R+ T   FDVWS
Sbjct: 44  HGLAGKAVLSNAKYLSVLTRFRTSTRFDVWS 74


>At2g44930.1 68415.m05593 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 515

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +2

Query: 47  IYLTTSEGVTNSTNCGYFQADF--DLISALGTWHVVAIIPEKLFPDKDVTCYKMEIS 211
           I L+T E  T S   G +   F   L+S  GT     I+     P K  +CY+ EIS
Sbjct: 16  IQLSTRENETGSGKVGRWSEGFRDPLVSKHGTAEKAKIVSVTTKPYKPDSCYESEIS 72


>At4g32690.1 68417.m04653 2-on-2 hemoglobin (GLB3) identical to
           2-on-2 hemoglobin (GLB3) GI:14165163 from [Arabidopsis
           thaliana]
          Length = 175

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
 Frame = -2

Query: 655 EQNIFQGIIADFRQSLGSSDFGRQFED---WFQLLFGNSLIPSINDNRYQF-------PP 506
           E N+F  +      +L ++ + R ++D   WFQ +F NS       N+Y+F       PP
Sbjct: 24  ESNLFDKLGLQTFINLSTNFYTRVYDDEEEWFQSIFSNSNKEDAIQNQYEFFVQRMGGPP 83

Query: 505 EHLHQKRTRTIFGVH 461
            +  +K    + G H
Sbjct: 84  LYSQRKGHPALIGRH 98


>At4g28800.1 68417.m04118 bHLH family protein contains Pfam profile:
           PF00010 helix-loop-helix DNA-binding domain
          Length = 478

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = -2

Query: 616 QSLGSSDFGRQFEDWFQLLFGNSLIPSINDNRYQFPPEHLHQKRTRTIFGVHYVQLHHS 440
           Q +G++   RQ  D   +L G+       +     PP HLHQ+      G  Y  LHHS
Sbjct: 31  QVVGTNQTHRQSYDPPPILRGSGSGRGEENAPLSQPPPHLHQQNLFIQEGEMYSWLHHS 89


>At4g30230.1 68417.m04299 hypothetical protein 
          Length = 260

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 565 LLFGNSLIPSINDNRYQFPPEHLHQK-RTRT 476
           ++FG  LIP    N +  PPEH+ ++ R+R+
Sbjct: 75  IIFGGKLIPLNYQNAFFSPPEHISRRIRSRS 105


>At5g64650.1 68418.m08125 ribosomal protein L17 family protein
           contains Pfam profile: PF01196 ribosomal protein L17
          Length = 160

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 514 TDICCRLSKESGNYRRAVETNLRIGDQNP 600
           T++  R    +G Y R + T +R+GD  P
Sbjct: 78  TELAHRYKDRAGGYTRMLRTRIRVGDAAP 106


>At5g46130.1 68418.m05673 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 376

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 230 LRWLINRTTHGPQNKSIIADVKGTIVRQRYHTEHPFDVW 346
           LRW+   TTHG +     + +K +   QR++T  P   W
Sbjct: 170 LRWINIETTHGHECICPYSSLKYSKKEQRFYTSTPGGDW 208


>At5g09770.1 68418.m01131 ribosomal protein L17 family protein
           contains Pfam profile: PF01196 ribosomal protein L17
          Length = 160

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 514 TDICCRLSKESGNYRRAVETNLRIGDQNP 600
           T++  R    +G Y R + T +R+GD  P
Sbjct: 78  TELAHRYKDRAGGYTRLLRTRIRVGDAAP 106


>At2g40230.1 68415.m04947 transferase family protein similar to
           taxadienol acetyl transferase from Taxus cuspidata
           [gi:6978038]; contains Pfam transferase family domain
           PF002458
          Length = 433

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 395 LDLDKNRIHKTLAHDAMMQLHIVDSKDGSSPFLMQMLW 508
           LD  K   H T +   ++ LH++D   G+ P ++Q+ W
Sbjct: 109 LDFQKPPRHVT-SWRKLLSLHVIDVLAGAPPLVVQLTW 145


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,721,821
Number of Sequences: 28952
Number of extensions: 332300
Number of successful extensions: 803
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)