Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0020
(596 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53970.1 68416.m05963 proteasome inhibitor-related similar to... 44 8e-05
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 37 0.009
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 35 0.047
At4g03120.1 68417.m00425 proline-rich family protein similar to ... 31 0.44
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s... 30 1.3
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 30 1.3
At3g05220.2 68416.m00570 heavy-metal-associated domain-containin... 29 2.4
At3g05220.1 68416.m00569 heavy-metal-associated domain-containin... 29 2.4
At4g19200.1 68417.m02833 proline-rich family protein contains pr... 29 3.1
At5g24390.1 68418.m02875 RabGAP/TBC domain-containing protein si... 28 4.1
At3g14740.2 68416.m01864 PHD finger family protein similar to zi... 28 4.1
At3g14740.1 68416.m01863 PHD finger family protein similar to zi... 28 4.1
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 28 5.4
At5g45350.1 68418.m05567 proline-rich family protein contains pr... 27 7.2
At3g47750.1 68416.m05202 ABC transporter family protein probable... 27 7.2
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 27 7.2
At2g18470.1 68415.m02151 protein kinase family protein contains ... 27 7.2
At1g10390.1 68414.m01171 nucleoporin family protein contains Pfa... 27 7.2
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 27 9.5
>At3g53970.1 68416.m05963 proteasome inhibitor-related similar to
proteasome inhibitor PI31 subunit (hPI31) SP:Q92530 from
[Homo sapiens]
Length = 302
Score = 44.0 bits (99), Expect = 8e-05
Identities = 43/146 (29%), Positives = 60/146 (41%), Gaps = 13/146 (8%)
Frame = -3
Query: 585 NYKDFIFVIKRDLIDSITDKPTATSETQTASDHSNTXXXXXXXXXXXXXXXPGVNPDSQD 406
N + ++ ++ID + KP + +S +N ++P
Sbjct: 135 NLDKLVTDLQSEIIDKLDGKPKPVASRAQSSSETNEEPRYYDDTPNPLGPQ--IHPSGVV 192
Query: 405 LWAVPPGRNVGHSDLDP-----FSP----FG-GGMIFNPFAPRRDIENPGLGVPG--GLP 262
+ +P N G+SDL P P FG G M+ P PR G PG G P
Sbjct: 193 VPPIPG--NGGYSDLFPGPGAGMYPGRGGFGDGSMLVGPTDPRFFPFGDGSDRPGFMGPP 250
Query: 261 RAAVPP-GARFDPFAPPGVGEPIPGR 187
+PP GARFDP+ PPGV PGR
Sbjct: 251 HPGMPPPGARFDPYGPPGVPGFEPGR 276
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 37.1 bits (82), Expect = 0.009
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -3
Query: 369 SDLDPFSPFGGGMIFNPFAPRRDIENPGLGV--PGGLPRAAVPPGARFDPFAPPGVGEP 199
++L P PF GM F P A + +NP GV PG +P+ PG R PF P G P
Sbjct: 71 TNLPPPPPFRPGMQFTPVA---NFQNPSSGVPPPGSMPQYQPQPGMR--PFQPMANGYP 124
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 34.7 bits (76), Expect = 0.047
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 236 RAPGGTAALGNPPGTPRPGFSMSRR-GANGLNIIP-PPKGENGSRSEWPTLRPG 391
RAPG + +PPG P PG G NG +++P P G P +RPG
Sbjct: 425 RAPGPMSGFHHPPGGPMPGPPQHMYVGQNGASMVPSQPIGYGFQPQFMPGMRPG 478
>At4g03120.1 68417.m00425 proline-rich family protein similar to U1
small nuclear ribonucleoprotein C; contains proline rich
extensin domains, INTERPRO:IPR002965
Length = 207
Score = 31.5 bits (68), Expect = 0.44
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Frame = -3
Query: 321 PFAPRRDIENPGLGVPGGLPRAAVPPGARFDP------FAPPGVGEPIPGR 187
P PR + G P G+P+ PPGA P PPG+ PIPG+
Sbjct: 97 PVLPRPMMPPQGYMPPPGVPQMMAPPGAPLPPPPQNGILRPPGMA-PIPGQ 146
>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
similarity to flagelliform silk protein [Nephila
clavipes] gi|7106224|gb|AAF36090
Length = 1504
Score = 29.9 bits (64), Expect = 1.3
Identities = 28/86 (32%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Frame = -3
Query: 429 GVNPDSQDLWAVPPGRNVGHSDLDPFSPFGGGMIFNPFAPRRDI-ENPGLGV-----PGG 268
G++P + DL G ++G LD + GG PF I + PG G PG
Sbjct: 1090 GISPPNIDLPVA--GTSIG-GPLDEGASDGGPPDVGPFGISPSIIDPPGEGAFDGDPPGK 1146
Query: 267 LPRAAVPPGARFDPFAPPGVGEPIPG 190
LP P G +PPG G P G
Sbjct: 1147 LPLDISPVGKGPSGVSPPGAGPPGDG 1172
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3
Query: 282 GVPGGLPRAAVPPGARFDPFAPPGVGEPIP 193
G G PR +PP AR P PP P+P
Sbjct: 533 GSRGRRPRPPLPPPARARPLPPPARARPMP 562
>At3g05220.2 68416.m00570 heavy-metal-associated domain-containing
protein similar to farnesylated protein 1 (GI:23304411)
{Hordeum vulgare subsp. spontaneum}; contains Pfam
profile PF00403: Heavy-metal-associated domain
Length = 478
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/45 (37%), Positives = 19/45 (42%)
Frame = +2
Query: 227 GSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGS 361
G PGG G P G PG MS G G + P G+ GS
Sbjct: 330 GGPMGPGGPMGQGGPMGMMGPGGPMSMMGPGG--PMGPMGGQGGS 372
>At3g05220.1 68416.m00569 heavy-metal-associated domain-containing
protein similar to farnesylated protein 1 (GI:23304411)
{Hordeum vulgare subsp. spontaneum}; contains Pfam
profile PF00403: Heavy-metal-associated domain
Length = 577
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/45 (37%), Positives = 19/45 (42%)
Frame = +2
Query: 227 GSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGS 361
G PGG G P G PG MS G G + P G+ GS
Sbjct: 429 GGPMGPGGPMGQGGPMGMMGPGGPMSMMGPGG--PMGPMGGQGGS 471
>At4g19200.1 68417.m02833 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 179
Score = 28.7 bits (61), Expect = 3.1
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Frame = -3
Query: 387 GRNVGHSDLDP-FSPFGGGMIFNP----FAPRRDIENPGLGVPGGLPRAAVPPGARFDPF 223
G++ H + + F F GG + P + P+ G GG P A PPGA P
Sbjct: 4 GKDKHHDEQEKGFHGFPGGGHYPPAQGGYPPQGYPPQQGYPPAGGYPPAGYPPGAY--PA 61
Query: 222 APPGVGEPIPG 190
AP G P PG
Sbjct: 62 APGGY-PPAPG 71
>At5g24390.1 68418.m02875 RabGAP/TBC domain-containing protein
similar to GTPase activating protein [Yarrowia
lipolytica] GI:2370595; contains Pfam profile PF00566:
TBC domain
Length = 528
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +1
Query: 262 WQSTWNTQAWV---LNVSTWSKRVKYHSTPERRERIEI*MANVTARR 393
W+ W QA + + S+WS+R+K + P + + A+V RR
Sbjct: 432 WEVIWADQAAIRAGMGKSSWSRRIKQRAPPTEDLLLYVVAASVLQRR 478
>At3g14740.2 68416.m01864 PHD finger family protein similar to
zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
contains PHD-finger domain PF00628
Length = 343
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 420 PDSQDLWAVPPGRNVGHSDLDPFSPFGGGMIFNPFAPRRDIE 295
P + +WA+ P G + PFSPF + + P+ + IE
Sbjct: 68 PAKKRIWAIDPDLLSGGGN--PFSPFDLNVEYKPYVEEKSIE 107
>At3g14740.1 68416.m01863 PHD finger family protein similar to
zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
contains PHD-finger domain PF00628
Length = 341
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 420 PDSQDLWAVPPGRNVGHSDLDPFSPFGGGMIFNPFAPRRDIE 295
P + +WA+ P G + PFSPF + + P+ + IE
Sbjct: 68 PAKKRIWAIDPDLLSGGGN--PFSPFDLNVEYKPYVEEKSIE 107
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +2
Query: 227 GSKRAPGGTAALGNPPGTPR--PGFSMS 304
GSK P GTA+ PP P PGFS S
Sbjct: 333 GSKPTPAGTASNPLPPPAPAPIPGFSAS 360
>At5g45350.1 68418.m05567 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 177
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Frame = -3
Query: 291 PGLGVPGGLPRAAVPPGARFDPFA--PPGVGEPIPG 190
PG P G P+ PP P A PPG P PG
Sbjct: 24 PGAYPPAGYPQQGYPPPPGAYPPAGYPPGAYPPAPG 59
>At3g47750.1 68416.m05202 ABC transporter family protein probable
transport protein ABC-C, Homo sapiens, PIR2:S71363
Length = 944
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = -3
Query: 312 PRRDIENPGLGVPGGLPRAAVPPGARFDPFAPPGVGE 202
P RD P + V GGL AVPPG F P G G+
Sbjct: 632 PGRDGNPPKMAV-GGLS-IAVPPGECFGMLGPNGAGK 666
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 27.5 bits (58), Expect = 7.2
Identities = 19/50 (38%), Positives = 20/50 (40%)
Frame = -3
Query: 342 GGGMIFNPFAPRRDIENPGLGVPGGLPRAAVPPGARFDPFAPPGVGEPIP 193
GGG F P P GVP G P A P G P PG+ P P
Sbjct: 136 GGGSSF-PQPGGFPASGPPGGVPSGPPSGARPIGFGSPPPMGPGMSMPPP 184
>At2g18470.1 68415.m02151 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 633
Score = 27.5 bits (58), Expect = 7.2
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = +2
Query: 227 GSKRAPGGTAALGN--PPGTPRPGFSMSR-RGANGLNIIPPPKGENGSRSEWPTLRPGGT 397
G +R GG GN PP P SR G NG + PP GSRS+ P G +
Sbjct: 80 GGERGNGGNNG-GNDTPPSRGSPPSPPSRSNGDNGGSRSSPPGDTGGSRSDNPPSSGGSS 138
>At1g10390.1 68414.m01171 nucleoporin family protein contains Pfam
profiles: PF04096 nucleoporin autopeptidase, PF03093
nucleoporin FG repeat family
Length = 1041
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 429 GVNPDSQDLWAVPPGRNVGHSDLDPFSPFGGGMIFNPFAPR 307
G++P + ++ P G + +P +PF NPFAP+
Sbjct: 412 GISPSQPNPFSPSPA--FGQTSANPTNPFSSSTSTNPFAPQ 450
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 27.1 bits (57), Expect = 9.5
Identities = 23/65 (35%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Frame = -3
Query: 393 PPGRNVGHSDLDPFSPFGGGMIFNPFAPRR----DIENPGLGVPGGLPRAAVP-PGARFD 229
PP G P GGM+ P P PG+ PGG P A P PG
Sbjct: 186 PPPPQYGGQQRPMMIPPPGGMMRGPPPPHGMQGPPPSRPGMPPPGGAPMFAPPHPGM--- 242
Query: 228 PFAPP 214
P APP
Sbjct: 243 PPAPP 247
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,895,552
Number of Sequences: 28952
Number of extensions: 294827
Number of successful extensions: 975
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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