Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0012
         (442 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19980.1 68418.m02378 integral membrane family protein contai...    28   2.4  
At2g14080.1 68415.m01566 disease resistance protein (TIR-NBS-LRR...    28   3.2  
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR...    27   4.2  
At5g17970.1 68418.m02108 disease resistance protein (TIR-NBS-LRR...    27   5.6  
At4g17140.1 68417.m02580 pleckstrin homology (PH) domain-contain...    27   5.6  
At4g00400.1 68417.m00054 phospholipid/glycerol acyltransferase f...    27   5.6  
At5g46520.1 68418.m05728 disease resistance protein (TIR-NBS-LRR...    26   9.8  
At5g46510.1 68418.m05727 disease resistance protein (TIR-NBS-LRR...    26   9.8  
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ...    26   9.8  
At2g38440.1 68415.m04721 expressed protein                             26   9.8  
At2g11490.1 68415.m01236 hypothetical protein                          26   9.8  
At1g62310.1 68414.m07031 transcription factor jumonji (jmjC) dom...    26   9.8  

>At5g19980.1 68418.m02378 integral membrane family protein contains
           Pfam profile: PF00892 Integral membrane protein; similar
           to LPG2 protein (GI:9998817)  [Leishmania mexicana]
          Length = 341

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = -1

Query: 178 LIIGWAVCSSAIAVLKSLSV 119
           L+IG+A+CSS +AV+  L++
Sbjct: 17  LVIGYALCSSLLAVINKLAI 36


>At2g14080.1 68415.m01566 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1215

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 303 PLPCFPSAMRGPFLIELRMTSS 238
           P+ CFPS     FL+EL M  S
Sbjct: 640 PMTCFPSKFNPEFLVELNMWGS 661


>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1189

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 303 PLPCFPSAMRGPFLIELRMTSS 238
           P+ C PS +   FLIEL +T S
Sbjct: 642 PMTCLPSTVNVEFLIELNLTHS 663


>At5g17970.1 68418.m02108 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 780

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 309 SLPLPCFPSAMRGPFLIELRMTSS 238
           S P  C PS  R  FL+EL M  S
Sbjct: 601 SYPKKCLPSKFRPEFLVELTMRDS 624


>At4g17140.1 68417.m02580 pleckstrin homology (PH) domain-containing
           protein contains Pfam profile PF00169: PH domain
          Length = 1322

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 297 VEEETSFQSRMIFPLNLSKSQSVTKVYNQQTARSSWLKLGSGSECVGG 440
           ++ +   Q RM+    + +S        +Q A+SSW   G  SE  GG
Sbjct: 352 LDTDVILQWRMLAHKFVERSVQAENYSKKQQAKSSWWPFGGKSEVSGG 399


>At4g00400.1 68417.m00054 phospholipid/glycerol acyltransferase
           family protein 
          Length = 500

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = -1

Query: 280 YEGSFFNRAPNDFQCEGSGSTVLLIADILEHQ*PLIIGW 164
           YE +F +R P +    G G T + +A+ ++     ++G+
Sbjct: 433 YEATFLDRLPEEMTVNGGGKTPIEVANYVQKVIGAVLGF 471


>At5g46520.1 68418.m05728 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1298

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 330  SSGFGTKS-LPLPCFPSAMRGPFLIELRMTSSVKAAVQLY 214
            S  FGT S LP+P  P+ +  PF    R+ + V A+  +Y
Sbjct: 1019 SQPFGTSSSLPIPLLPTQLSQPF-FRFRVCAVVSASNGVY 1057


>At5g46510.1 68418.m05727 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1353

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 330  SSGFGTKS-LPLPCFPSAMRGPFLIELRMTSSVKAAVQLY 214
            S  FGT S LP+P  P+ +  PF    R+ + V A+  +Y
Sbjct: 980  SQPFGTSSSLPIPLLPTQLSQPF-FRFRVCAVVSASNGVY 1018


>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
           repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
           sapiens}; similar to WD repeat protein Srw1
           -Schizosaccharomyces pombe,PID:d1023012
          Length = 475

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 166 WAVCSSAIAVLKSLSVDETV 107
           W  CSS +  L  L VDETV
Sbjct: 193 WNACSSKVTKLCDLGVDETV 212


>At2g38440.1 68415.m04721 expressed protein 
          Length = 1399

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 9/38 (23%), Positives = 23/38 (60%)
 Frame = +3

Query: 288  GNTVEEETSFQSRMIFPLNLSKSQSVTKVYNQQTARSS 401
            G ++ ++    S  ++ LNL +S+++ +   +QT+ +S
Sbjct: 955  GESILDDNCIDSTQVYNLNLLESEAIDQAVREQTSYAS 992


>At2g11490.1 68415.m01236 hypothetical protein 
          Length = 168

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 181 PLIIGWAVCSSAIAVLKSL 125
           PL+ GWA+C   + V K +
Sbjct: 12  PLVTGWAICVMVVRVYKKI 30


>At1g62310.1 68414.m07031 transcription factor jumonji (jmjC)
           domain-containing protein similar to nuclear protein
           5qNCA [Homo sapiens] GI:13161188; contains Pfam profile
           PF02373: jmjC domain
          Length = 883

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 116 VDRQAFEDCNGRRAYGPSDDEWSLMLKDISNQEYS*TAAFTLEVIR 253
           VD+Q+ EDCN +      ++E  L + +IS+ E   T +   ++ R
Sbjct: 715 VDKQSTEDCNEKE----EEEEEELNMPEISSNENEETGSALWDIFR 756


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,369,407
Number of Sequences: 28952
Number of extensions: 181235
Number of successful extensions: 515
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)