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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0034
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria...    93   2e-19
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,...    93   2e-19
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria...    93   2e-19
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial...    44   1e-04
At1g21480.2 68414.m02686 exostosin family protein contains Pfam ...    31   1.1  
At1g21480.1 68414.m02685 exostosin family protein contains Pfam ...    31   1.1  
At1g50500.1 68414.m05664 membrane trafficking VPS53 family prote...    29   2.5  
At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN ...    29   3.3  

>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
           identical to SP|P83484 ATP synthase beta chain 2,
           mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
           thaliana}; strong similarity to SP|P17614 ATP synthase
           beta chain, mitochondrial precursor (EC 3.6.3.14)
           {Nicotiana plumbaginifolia}; contains Pfam profiles
           PF00006: ATP synthase alpha/beta family
           nucleotide-binding domain, PF00306: ATP synthase ab C
           terminal, PF02874: ATP synthase alpha/beta family
           beta-barrel domain; supporting cDNA
           gi|26452187|dbj|AK118582.1|
          Length = 556

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 49/95 (51%), Positives = 57/95 (60%)
 Frame = +2

Query: 275 VRTIAMDGTECLVRGQPVLYSGSPIXXPXXAXTLXXIINVXGXPIDXRGPIPTDKTAAIH 454
           VRTIAMDGTE LVRG+ VL +G+PI  P    TL  I+NV G PID RG I T+    IH
Sbjct: 133 VRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIH 192

Query: 455 AESPXVVDXXAQHETXVXVIKVXDXLXPYAXGGXI 559
            ++P +VD     E     IKV D L PY  GG I
Sbjct: 193 RDAPALVDLATGQEILATGIKVVDLLAPYQRGGKI 227



 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 33/53 (62%), Positives = 39/53 (73%), Gaps = 3/53 (5%)
 Frame = +1

Query: 121 GKGQ-GKVVAVIGAXVDVQFEDN--LPPILNALEVQNRSPRLVLEVTQHLGXN 270
           GKG  G+V  VIGA VDV+FED   LPPI+ +LEVQ+   RLVLEV+ HLG N
Sbjct: 79  GKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQN 131



 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 28/41 (68%), Positives = 31/41 (75%)
 Frame = +1

Query: 586 GKTXLIMELINNVCQAHGXYSGIAGXGERPPDRNDLYXEMI 708
           GKT LIMELINNV +AHG +S  AG GER  + NDLY EMI
Sbjct: 236 GKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMI 276


>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
           putative strong similarity to SP|P83483 ATP synthase
           beta chain 1, mitochondrial precursor (EC 3.6.3.14)
           {Arabidopsis thaliana}, SP|P17614 ATP synthase beta
           chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
           plumbaginifolia}; contains Pfam profiles PF00006: ATP
           synthase alpha/beta family nucleotide-binding domain,
           PF00306: ATP synthase ab C terminal, PF02874: ATP
           synthase alpha/beta family beta-barrel domain
          Length = 559

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 49/95 (51%), Positives = 57/95 (60%)
 Frame = +2

Query: 275 VRTIAMDGTECLVRGQPVLYSGSPIXXPXXAXTLXXIINVXGXPIDXRGPIPTDKTAAIH 454
           VRTIAMDGTE LVRG+ VL +G+PI  P    TL  I+NV G PID RG I T+    IH
Sbjct: 136 VRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIH 195

Query: 455 AESPXVVDXXAQHETXVXVIKVXDXLXPYAXGGXI 559
            ++P +VD     E     IKV D L PY  GG I
Sbjct: 196 RDAPALVDLATGQEILATGIKVVDLLAPYQRGGKI 230



 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 33/53 (62%), Positives = 39/53 (73%), Gaps = 3/53 (5%)
 Frame = +1

Query: 121 GKGQ-GKVVAVIGAXVDVQFEDN--LPPILNALEVQNRSPRLVLEVTQHLGXN 270
           GKG  G+V  VIGA VDV+FED   LPPI+ +LEVQ+   RLVLEV+ HLG N
Sbjct: 82  GKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQN 134



 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 28/41 (68%), Positives = 31/41 (75%)
 Frame = +1

Query: 586 GKTXLIMELINNVCQAHGXYSGIAGXGERPPDRNDLYXEMI 708
           GKT LIMELINNV +AHG +S  AG GER  + NDLY EMI
Sbjct: 239 GKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMI 279


>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
           identical to SP|P83483 ATP synthase beta chain 1,
           mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
           thaliana}; strong similarity to SP|P17614 ATP synthase
           beta chain, mitochondrial precursor (EC 3.6.3.14)
           {Nicotiana plumbaginifolia}; contains Pfam profiles
           PF00006: ATP synthase alpha/beta family
           nucleotide-binding domain, PF00306: ATP synthase ab C
           terminal, PF02874: ATP synthase alpha/beta family
           beta-barrel domain; supporting cDNA
           gi|26452102|dbj|AK118538.1|
          Length = 556

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 49/95 (51%), Positives = 57/95 (60%)
 Frame = +2

Query: 275 VRTIAMDGTECLVRGQPVLYSGSPIXXPXXAXTLXXIINVXGXPIDXRGPIPTDKTAAIH 454
           VRTIAMDGTE LVRG+ VL +G+PI  P    TL  I+NV G PID RG I T+    IH
Sbjct: 133 VRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIH 192

Query: 455 AESPXVVDXXAQHETXVXVIKVXDXLXPYAXGGXI 559
            ++P +VD     E     IKV D L PY  GG I
Sbjct: 193 RDAPALVDLATGQEILATGIKVVDLLAPYQRGGKI 227



 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 33/53 (62%), Positives = 39/53 (73%), Gaps = 3/53 (5%)
 Frame = +1

Query: 121 GKGQ-GKVVAVIGAXVDVQFEDN--LPPILNALEVQNRSPRLVLEVTQHLGXN 270
           GKG  G+V  VIGA VDV+FED   LPPI+ +LEVQ+   RLVLEV+ HLG N
Sbjct: 79  GKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQN 131



 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 28/41 (68%), Positives = 31/41 (75%)
 Frame = +1

Query: 586 GKTXLIMELINNVCQAHGXYSGIAGXGERPPDRNDLYXEMI 708
           GKT LIMELINNV +AHG +S  AG GER  + NDLY EMI
Sbjct: 236 GKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMI 276


>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
           putative very strong similarity to SP|P23413 ATP
           synthase alpha chain, mitochondrial (EC 3.6.3.14)
           {Brassica campestris}; contains Pfam profiles PF00006:
           ATP synthase alpha/beta family nucleotide-binding
           domain, PF00306: ATP synthase ab C terminal, PF02874:
           ATP synthase alpha/beta family beta-barrel domain
          Length = 777

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 21/93 (22%), Positives = 40/93 (43%)
 Frame = +2

Query: 272 HVRTIAMDGTECLVRGQPVLYSGSPIXXPXXAXTLXXIINVXGXPIDXRGPIPTDKTAAI 451
           +V  +   G   +  G  V  +GS +  P     L  +++  G PID +G +   +   +
Sbjct: 342 NVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGKGALSDHEQRRV 401

Query: 452 HAESPXVVDXXAQHETXVXVIKVXDXLXPYAXG 550
             ++P +++  + HE     +K  D L P   G
Sbjct: 402 EVKAPGILERKSVHEPMQTGLKAVDSLVPIGRG 434


>At1g21480.2 68414.m02686 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 410

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 55  QNVEKSLQSMPLTSRDYAAKSAGKGQGKVVAVIGAXVDVQFEDNL 189
           +N +  +Q +PL+ R Y A   G+ QGK   +    +  QF D L
Sbjct: 250 KNGQPDVQPLPLSKRKYLANYLGRAQGKAGRLKLIDLSKQFPDKL 294


>At1g21480.1 68414.m02685 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 462

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 55  QNVEKSLQSMPLTSRDYAAKSAGKGQGKVVAVIGAXVDVQFEDNL 189
           +N +  +Q +PL+ R Y A   G+ QGK   +    +  QF D L
Sbjct: 250 KNGQPDVQPLPLSKRKYLANYLGRAQGKAGRLKLIDLSKQFPDKL 294


>At1g50500.1 68414.m05664 membrane trafficking VPS53 family protein
           contains Pfam domain PF04100: Vps53-like, N-terminal
          Length = 798

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +2

Query: 47  IPFRMWKNRCSQCR*QVGTMLLNLQEKAKXRLLPLSV 157
           +P+R+    C Q R QV ++L+N++EK    +L L++
Sbjct: 271 VPYRLCIQFCKQTRKQVESILVNMKEKPVVAILLLAL 307


>At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN
           protein (ETT) identical to ETTIN GB:AF007788 from
           [Arabidopsis thaliana]
          Length = 608

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 271 CXHPNVGLPQVRGGEIDFAPQGHLESEAGY-LRIAHLPQH 155
           C  P + LP+ RG  + + PQGHLE    +   I  LP H
Sbjct: 59  CAGPLISLPK-RGSLVLYFPQGHLEQAPDFSAAIYGLPPH 97


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,268,911
Number of Sequences: 28952
Number of extensions: 201120
Number of successful extensions: 442
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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