Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0027
(600 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 105 2e-23
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 103 9e-23
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 94 7e-20
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 76 2e-14
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 75 3e-14
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 66 2e-11
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 59 3e-09
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 51 7e-07
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 51 7e-07
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 51 7e-07
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 51 7e-07
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 51 7e-07
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 48 6e-06
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 47 1e-05
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 46 1e-05
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 41 5e-04
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 39 0.003
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 39 0.003
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 38 0.004
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.004
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.004
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 38 0.005
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 37 0.009
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 36 0.027
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 35 0.047
At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein... 33 0.11
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 33 0.14
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 33 0.14
At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)... 32 0.33
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 32 0.33
At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger) fa... 31 0.44
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 31 0.58
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 31 0.77
At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar ... 31 0.77
At5g47430.1 68418.m05844 expressed protein 30 1.0
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 30 1.0
At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein... 30 1.0
At4g17410.1 68417.m02607 expressed protein 30 1.0
At3g31950.1 68416.m04046 hypothetical protein 30 1.0
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 30 1.0
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 30 1.0
At5g08730.1 68418.m01037 IBR domain-containing protein contains ... 30 1.3
At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identic... 30 1.3
At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identic... 30 1.3
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 30 1.3
At2g16690.1 68415.m01915 hypothetical protein similar to zinc fi... 29 1.8
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 29 1.8
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 29 2.4
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein... 29 2.4
At2g41570.1 68415.m05137 hypothetical protein similar to zinc fi... 29 2.4
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim... 29 2.4
At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical ... 29 3.1
At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein... 29 3.1
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 29 3.1
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 29 3.1
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 28 4.1
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 28 4.1
At1g40080.1 68414.m04737 hypothetical protein member of hypothet... 28 4.1
At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein... 28 5.4
At4g06479.1 68417.m00885 hypothetical protein 28 5.4
At2g32000.1 68415.m03910 DNA topoisomerase family protein simila... 27 7.2
At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains... 27 7.2
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 27 9.5
At5g47390.1 68418.m05840 myb family transcription factor contain... 27 9.5
At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein... 27 9.5
At5g32613.1 68418.m03881 zinc knuckle (CCHC-type) family protein... 27 9.5
At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein... 27 9.5
At4g10630.1 68417.m01737 glutaredoxin family protein contains Pf... 27 9.5
At4g06526.1 68417.m00938 hypothetical protein 27 9.5
At2g19650.1 68415.m02296 DC1 domain-containing protein contains ... 27 9.5
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina... 27 9.5
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 105 bits (253), Expect = 2e-23
Identities = 55/164 (33%), Positives = 71/164 (43%), Gaps = 31/164 (18%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA---------- 271
CY C TGHFAR+CT G + + C+ C GH ARDC +++
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAV 193
Query: 272 ----DRCYRCNGTGHIARECAQ----------SPDEPSCYNCNKTGHIXRNCPEGGREXA 409
D CY C GH AR+C Q +CY+C GHI R+C +
Sbjct: 194 KGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDC--ATKRQP 251
Query: 410 TQTCYNCNKXGHIXRNCXD-------GXKTCYVCGKPGHIXREC 520
++ CY C GH+ R+C CY CGK GH REC
Sbjct: 252 SRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFAREC 295
Score = 103 bits (248), Expect = 7e-23
Identities = 58/171 (33%), Positives = 75/171 (43%), Gaps = 34/171 (19%)
Frame = +2
Query: 116 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC------------ 259
S CY C GH +++C GG +R E C+ C TGHFARDC
Sbjct: 100 SGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGAT 159
Query: 260 KEEADRCYRCNGTGHIARECAQSP------------DEPSCYNCNKTGHIXRNCPE---G 394
K D CY C GH+AR+C Q CY C GH R+C +
Sbjct: 160 KGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAA 219
Query: 395 GREXA----TQTCYNCNKXGHIXRNC---XDGXKTCYVCGKPGHIXRECDE 526
G + + TCY+C GHI R+C + CY CG GH+ R+CD+
Sbjct: 220 GNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQ 270
Score = 58.8 bits (136), Expect = 3e-09
Identities = 35/97 (36%), Positives = 46/97 (47%), Gaps = 30/97 (30%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQ--------------------GGV--VSRDSGFNRQREK-CFKCN 232
CY C GHFAR+CTQ GGV ++RD RQ + C++C
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCG 259
Query: 233 RTGHFARDCKEEA-------DRCYRCNGTGHIARECA 322
+GH ARDC + + CY+C GH AREC+
Sbjct: 260 GSGHLARDCDQRGSGGGGNDNACYKCGKEGHFARECS 296
Score = 52.0 bits (119), Expect = 3e-07
Identities = 22/50 (44%), Positives = 28/50 (56%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA 271
CY+C +GH AR+C Q G SG C+KC + GHFAR+C A
Sbjct: 255 CYQCGGSGHLARDCDQRG-----SGGGGNDNACYKCGKEGHFARECSSVA 299
Score = 35.1 bits (77), Expect = 0.036
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 110 SSSVCYKCNRTGHFARECT 166
+ + CYKC + GHFAREC+
Sbjct: 278 NDNACYKCGKEGHFARECS 296
Score = 27.9 bits (59), Expect = 5.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 467 GXKTCYVCGKPGHIXREC 520
G CY CG+ GHI ++C
Sbjct: 98 GGSGCYNCGELGHISKDC 115
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 103 bits (247), Expect = 9e-23
Identities = 58/168 (34%), Positives = 72/168 (42%), Gaps = 35/168 (20%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK------------- 262
CY C GHFAR+C Q G + G R C+ C GH A+DC+
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGR-PCYSCGEVGHLAKDCRGGSGGNRYGGGGG 190
Query: 263 --EEADRCYRCNGTGHIARECAQS------PDEPSCYNCNKTGHIXRNC----PEGGREX 406
D CY C G GH AR+C Q+ +CY C GHI + C P GG
Sbjct: 191 RGSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGG-GG 249
Query: 407 ATQTCYNCNKXGHIXRNC----------XDGXKTCYVCGKPGHIXREC 520
+ CY C GH+ R+C G C++CGK GH REC
Sbjct: 250 GGRACYECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFAREC 297
Score = 91.1 bits (216), Expect = 5e-19
Identities = 54/177 (30%), Positives = 72/177 (40%), Gaps = 39/177 (22%)
Frame = +2
Query: 110 SSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQ---REKCFKCNRTGHFARDCKEEAD- 274
S C+ C GH A++C G G S G R+ +C+ C GHFARDC++
Sbjct: 92 SGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGG 151
Query: 275 ----------RCYRCNGTGHIAREC-------------AQSPDEPSCYNCNKTGHIXRNC 385
CY C GH+A++C + CY C GH R+C
Sbjct: 152 NSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDC 211
Query: 386 PEGGR---EXATQTCYNCNKXGHIXRNCXD--------GXKTCYVCGKPGHIXRECD 523
+ G TCY C GHI + C G + CY CG GH+ R+CD
Sbjct: 212 RQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLARDCD 268
Score = 70.9 bits (166), Expect = 6e-13
Identities = 50/156 (32%), Positives = 60/156 (38%), Gaps = 43/156 (27%)
Frame = +2
Query: 182 SRDSGFNRQREKCFKCNRTGHFARDCKEEA----------------DRCYRCNGTGHIAR 313
SR SG N CF C GH A+DC + CY C GH AR
Sbjct: 89 SRGSGGN-----CFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFAR 143
Query: 314 ECAQSPDEPS---------CYNCNKTGHIXRNC----------PEGGREXATQTCYNCNK 436
+C QS S CY+C + GH+ ++C GGR CY C
Sbjct: 144 DCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGG 203
Query: 437 XGHIXRNCXD--------GXKTCYVCGKPGHIXREC 520
GH R+C G TCY CG GHI + C
Sbjct: 204 VGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVC 239
Score = 55.6 bits (128), Expect = 2e-08
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Frame = +2
Query: 116 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEE--------- 268
S CY C GH A+ CT + S G R C++C TGH ARDC
Sbjct: 224 STCYTCGGVGHIAKVCTSK-IPSGGGGGGRA---CYECGGTGHLARDCDRRGSGSSGGGG 279
Query: 269 -ADRCYRCNGTGHIAREC 319
+++C+ C GH AREC
Sbjct: 280 GSNKCFICGKEGHFAREC 297
Score = 54.8 bits (126), Expect = 4e-08
Identities = 24/50 (48%), Positives = 29/50 (58%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA 271
CY+C TGH AR+C + G S SG KCF C + GHFAR+C A
Sbjct: 254 CYECGGTGHLARDCDRRG--SGSSGGGGGSNKCFICGKEGHFARECTSVA 301
Score = 37.5 bits (83), Expect = 0.007
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +2
Query: 341 SCYNCNKTGHIXRNCPEGGREXATQTCYNCNKXGHIXRNCXDGXKTCYVCGKPGHIXREC 520
+C+NC + GH+ ++C +GG + + G G CY+CG GH R+C
Sbjct: 95 NCFNCGEVGHMAKDC-DGGSGGKSFGGGGGRRSG--------GEGECYMCGDVGHFARDC 145
Query: 521 DEA 529
++
Sbjct: 146 RQS 148
Score = 32.3 bits (70), Expect = 0.25
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 113 SSVCYKCNRTGHFARECT 166
S+ C+ C + GHFARECT
Sbjct: 281 SNKCFICGKEGHFARECT 298
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 93.9 bits (223), Expect = 7e-20
Identities = 48/136 (35%), Positives = 67/136 (49%), Gaps = 1/136 (0%)
Frame = +2
Query: 116 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNG 295
++C C R GHFAR+C+ V C C GH A +C E+ RC+ C
Sbjct: 55 NLCNNCKRPGHFARDCSNVSV-------------CNNCGLPGHIAAECTAES-RCWNCRE 100
Query: 296 TGHIARECAQSPDEPSCYNCNKTGHIXRNCPEG-GREXATQTCYNCNKXGHIXRNCXDGX 472
GH+A C+ +E C++C K+GH R+C R + C NC K GH+ +C +
Sbjct: 101 PGHVASNCS---NEGICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADCTN-D 156
Query: 473 KTCYVCGKPGHIXREC 520
K C C GHI R+C
Sbjct: 157 KACKNCRTSGHIARDC 172
Score = 79.8 bits (188), Expect = 1e-15
Identities = 41/111 (36%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Frame = +2
Query: 206 QREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIXRNC 385
Q C C R GHFARDC C C GHIA EC E C+NC + GH+ NC
Sbjct: 53 QGNLCNNCKRPGHFARDCSN-VSVCNNCGLPGHIAAECTA---ESRCWNCREPGHVASNC 108
Query: 386 PEGGREXATQTCYNCNKXGHIXRNCXDG------XKTCYVCGKPGHIXREC 520
G C++C K GH R+C + + C C K GH+ +C
Sbjct: 109 SNEG------ICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADC 153
Score = 77.8 bits (183), Expect = 5e-15
Identities = 49/149 (32%), Positives = 73/149 (48%), Gaps = 8/149 (5%)
Frame = +2
Query: 110 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRC 289
+ +C+ C ++GH AR+C+ SR +G R CFK GH A DC + C C
Sbjct: 110 NEGICHSCGKSGHRARDCSNSD--SR-AGDLRLCNNCFK---QGHLAADCTND-KACKNC 162
Query: 290 NGTGHIARECAQSPDEPSCYNCNKTGHIXRNCPEGG---REXATQTCYNCNKXGHIXRNC 460
+GHIAR+C ++P C C+ +GH+ R+CP+G + ++ + G + R
Sbjct: 163 RTSGHIARDCR---NDPVCNICSISGHVARHCPKGDSNYSDRGSRVRDGGMQRGGLSRMS 219
Query: 461 XD--GXKT---CYVCGKPGHIXRECDEAR 532
D G C+ CG GH EC AR
Sbjct: 220 RDREGVSAMIICHNCGGRGHRAYECPSAR 248
Score = 70.9 bits (166), Expect = 6e-13
Identities = 44/130 (33%), Positives = 57/130 (43%), Gaps = 12/130 (9%)
Frame = +2
Query: 116 SVCYKCNRTGHFARECTQGGVV--SRDSGF---NRQREK-CFKCNRTGHFARDCKEEADR 277
SVC C GH A ECT R+ G N E C C ++GH ARDC R
Sbjct: 74 SVCNNCGLPGHIAAECTAESRCWNCREPGHVASNCSNEGICHSCGKSGHRARDCSNSDSR 133
Query: 278 ------CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIXRNCPEGGREXATQTCYNCNKX 439
C C GH+A +C ++ +C NC +GHI R+C C C+
Sbjct: 134 AGDLRLCNNCFKQGHLAADCT---NDKACKNCRTSGHIARDCRN------DPVCNICSIS 184
Query: 440 GHIXRNCXDG 469
GH+ R+C G
Sbjct: 185 GHVARHCPKG 194
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 119 VCYKCNRTGHFARECTQGGVVSRDSGFNR 205
+C+ C GH A EC V D GF R
Sbjct: 230 ICHNCGGRGHRAYECPSARVA--DRGFRR 256
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 76.2 bits (179), Expect = 2e-14
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 14/145 (9%)
Frame = +2
Query: 104 AMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQRE---KCFKCNRTGHFARDCKEEAD 274
A + + CYKC + GH+AR+CT V D+G + CFKC + GH++RDC ++
Sbjct: 233 AKTGTPCYKCGKEGHWARDCT----VQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQS- 287
Query: 275 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIXRNCP--------EGGREXATQT---C 421
+ + S CY C K GH R+C + G+ +T + C
Sbjct: 288 -----GNPKYEPGQMKSSSSSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDC 342
Query: 422 YNCNKXGHIXRNCXDGXKTCYVCGK 496
Y C K GH R+C +T GK
Sbjct: 343 YKCGKAGHWSRDCTSPAQTTNTPGK 367
Score = 58.4 bits (135), Expect = 3e-09
Identities = 41/126 (32%), Positives = 54/126 (42%), Gaps = 25/126 (19%)
Frame = +2
Query: 218 CFKCNRTGHFARDCKEEADR-----------CYRCNGTGHIAREC-AQSPD---EPS--- 343
C+KC + GH+ARDC ++D C++C GH +R+C AQS + EP
Sbjct: 239 CYKCGKEGHWARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMK 298
Query: 344 -------CYNCNKTGHIXRNCPEGGREXATQTCYNCNKXGHIXRNCXDGXKTCYVCGKPG 502
CY C K GH R+C Q+ G G CY CGK G
Sbjct: 299 SSSSSGECYKCGKQGHWSRDCTGQSSNQQFQS-------GQAKSTSSTGD--CYKCGKAG 349
Query: 503 HIXREC 520
H R+C
Sbjct: 350 HWSRDC 355
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 12/73 (16%)
Frame = +2
Query: 338 PSCYNCNKTGHIXRNCPEGGREXATQT-CYNCNKXGHIXRNCXDGXKT-----------C 481
P+ Y+ K + + G + T T CY C K GH R+C T C
Sbjct: 211 PTSYSVTKNSNFGDSDTRGYQNAKTGTPCYKCGKEGHWARDCTVQSDTGPVKSTSAAGDC 270
Query: 482 YVCGKPGHIXREC 520
+ CGKPGH R+C
Sbjct: 271 FKCGKPGHWSRDC 283
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 75.4 bits (177), Expect = 3e-14
Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 20/128 (15%)
Frame = +2
Query: 212 EKCFKCNRTGHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEPS----CYNCNKT 364
E CF C+ H A+ C E+++ C +C GH + C + +E S CYNC T
Sbjct: 74 EGCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDT 133
Query: 365 GHIXRNCP----EGGREXATQTCYNCNKXGHIXRNCXDGXK-------TCYVCGKPGHIX 511
GH +CP +GG + A +C+ C GHI +NC + C VCG H+
Sbjct: 134 GHSLSHCPYPMEDGGTKFA--SCFICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAHLV 191
Query: 512 RECDEARN 535
++C + N
Sbjct: 192 KDCPDKFN 199
Score = 53.6 bits (123), Expect = 1e-07
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 12/113 (10%)
Frame = +2
Query: 113 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD------ 274
+ +C +C R GH + C + + + +++ C+ C TGH C +
Sbjct: 98 NKICLQCRRRGHSLKNCPE------KNNESSEKKLCYNCGDTGHSLSHCPYPMEDGGTKF 151
Query: 275 -RCYRCNGTGHIARECAQS-----PDEPSCYNCNKTGHIXRNCPEGGREXATQ 415
C+ C G GHI++ C ++ P C C H+ ++CP+ + + Q
Sbjct: 152 ASCFICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAHLVKDCPDKFNQESAQ 204
Score = 52.8 bits (121), Expect = 2e-07
Identities = 33/119 (27%), Positives = 47/119 (39%), Gaps = 7/119 (5%)
Frame = +2
Query: 185 RDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRC-NGTGHIARECAQSPDEPSCYNCNK 361
+D ++++ FK + G DR R + T H R P E C+ C+
Sbjct: 30 KDPNKKKKKKSLFKKKKPG-------SSTDRPQRTGSSTRHPLRVPGMKPGE-GCFICHS 81
Query: 362 TGHIXRNCPEGGREXATQTCYNCNKXGHIXRNCXD------GXKTCYVCGKPGHIXREC 520
HI + CPE + C C + GH +NC + K CY CG GH C
Sbjct: 82 KTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHC 140
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Frame = +2
Query: 419 CYNCNKXGHIXRNCXDGX-----KTCYVCGKPGHIXRECDEARN*PEAPCVXYN 565
C+ C+ HI + C + K C C + GH + C E N + YN
Sbjct: 76 CFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYN 129
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 65.7 bits (153), Expect = 2e-11
Identities = 48/157 (30%), Positives = 61/157 (38%), Gaps = 10/157 (6%)
Frame = +2
Query: 80 AQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC 259
A+ F P A S CY C GH + C ++R+ CF C H A+ C
Sbjct: 155 ARYFDPPDAGWVS-CYSCGEQGHTSFNCPTP---------TKRRKPCFICGSLEHGAKQC 204
Query: 260 KEEADRCYRCNGTGHIARECAQSPDEPS----CYNCNKTGHIXRNCP-EGGREXATQT-C 421
+ D CY C TGH A++C S C C GH C E +E C
Sbjct: 205 SKGHD-CYICKKTGHRAKDCPDKYKNGSKGAVCLRCGDFGHDMILCKYEYSKEDLKDVQC 263
Query: 422 YNCNKXGHI----XRNCXDGXKTCYVCGKPGHIXREC 520
Y C GH+ N +CY CG+ GH C
Sbjct: 264 YICKSFGHLCCVEPGNSLSWAVSCYRCGQLGHSGLAC 300
Score = 61.7 bits (143), Expect = 4e-10
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 19/88 (21%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSG-------FN-RQREKCFKCNRTGHFARDC------ 259
CY+C + GH C + S ++ FN R+ +C++C GHFAR+C
Sbjct: 287 CYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYRCGEEGHFARECPNSSSI 346
Query: 260 -----KEEADRCYRCNGTGHIARECAQS 328
+E CYRCNG+GH AREC S
Sbjct: 347 STSHGRESQTLCYRCNGSGHFARECPNS 374
Score = 58.8 bits (136), Expect = 3e-09
Identities = 26/77 (33%), Positives = 38/77 (49%)
Frame = +2
Query: 113 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCN 292
+S CY+C GHFAREC +S G + C++CN +GHFAR+C + R
Sbjct: 324 ASECYRCGEEGHFARECPNSSSISTSHG-RESQTLCYRCNGSGHFARECPNSSQVSKRDR 382
Query: 293 GTGHIARECAQSPDEPS 343
T + + + E S
Sbjct: 383 ETSTTSHKSRKKNKENS 399
Score = 55.2 bits (127), Expect = 3e-08
Identities = 48/171 (28%), Positives = 60/171 (35%), Gaps = 38/171 (22%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR-------C 280
CY C +TGH A++C +G + C +C GH CK E + C
Sbjct: 210 CYICKKTGHRAKDCPD----KYKNG--SKGAVCLRCGDFGHDMILCKYEYSKEDLKDVQC 263
Query: 281 YRCNGTGHIARECAQSPDEP-----SCYNCNKTGHIXRNCP---EGGREXATQT------ 418
Y C GH+ C P SCY C + GH C E E + T
Sbjct: 264 YICKSFGHL---CCVEPGNSLSWAVSCYRCGQLGHSGLACGRHYEESNENDSATPERLFN 320
Query: 419 ------CYNCNKXGHIXRNCXDGXKT-----------CYVCGKPGHIXREC 520
CY C + GH R C + CY C GH REC
Sbjct: 321 SREASECYRCGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFAREC 371
Score = 53.6 bits (123), Expect = 1e-07
Identities = 37/137 (27%), Positives = 48/137 (35%), Gaps = 7/137 (5%)
Frame = +2
Query: 71 VLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFA 250
+L E+SK + CY C GH C + G C++C + GH
Sbjct: 247 ILCKYEYSKE-DLKDVQCYICKSFGHLC--CVEPG------NSLSWAVSCYRCGQLGHSG 297
Query: 251 RDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIXRNCPEG-------GREXA 409
C + + S + CY C + GH R CP GRE
Sbjct: 298 LACGRHYEESNENDSA--TPERLFNSREASECYRCGEEGHFARECPNSSSISTSHGRESQ 355
Query: 410 TQTCYNCNKXGHIXRNC 460
T CY CN GH R C
Sbjct: 356 T-LCYRCNGSGHFAREC 371
Score = 52.0 bits (119), Expect = 3e-07
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +2
Query: 341 SCYNCNKTGHIXRNCPEGGREXATQTCYNCNKXGHIXRNCXDGXKTCYVCGKPGHIXREC 520
SCY+C + GH NCP + + C+ C H + C G CY+C K GH ++C
Sbjct: 167 SCYSCGEQGHTSFNCPTPTKR--RKPCFICGSLEHGAKQCSKG-HDCYICKKTGHRAKDC 223
Query: 521 -DEARN 535
D+ +N
Sbjct: 224 PDKYKN 229
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 110 SSSVCYKCNRTGHFARECTQGGVVS-RDSGFNRQREKCFKCNR 235
S ++CY+CN +GHFAREC VS RD + K K N+
Sbjct: 354 SQTLCYRCNGSGHFARECPNSSQVSKRDRETSTTSHKSRKKNK 396
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 58.8 bits (136), Expect = 3e-09
Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Frame = +2
Query: 263 EEADRCYRCNGTGHIARECAQSPDEPS-----CYNCNKTGHIXRNCPEGGREXA-TQTCY 424
+EA+ C RC G GH C CY CN GH+ C E G + T +CY
Sbjct: 23 DEAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLC--CIEPGHTQSWTVSCY 80
Query: 425 NCNKXGHIXRNCX----DGXK-TCYVCGKPGHIXREC 520
C + GH C D +C++CG+ GH +C
Sbjct: 81 RCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQC 117
Score = 56.4 bits (130), Expect = 1e-08
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 12/105 (11%)
Frame = +2
Query: 206 QREKCFKCNRTGHFARDCKEEAD-------RCYRCNGTGHIARECAQSPDEP-----SCY 349
+ E C +C GH CK E +CY CN GH+ C P SCY
Sbjct: 24 EAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHL---CCIEPGHTQSWTVSCY 80
Query: 350 NCNKTGHIXRNCPEGGREXATQTCYNCNKXGHIXRNCXDGXKTCY 484
C + GH C + + +C+ C + GH C + C+
Sbjct: 81 RCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQCHNSFSVCF 125
Score = 48.0 bits (109), Expect = 5e-06
Identities = 39/143 (27%), Positives = 53/143 (37%), Gaps = 10/143 (6%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 301
CY+C + GH C G DS CF C R GHF C C+ + +
Sbjct: 79 CYRCGQLGHTGLAC---GRHYDDS----VSPSCFICGREGHFEHQCHNSFSVCFPEDSSE 131
Query: 302 HIARECAQSPDEPSCYNCNKT-----GHIXRNCPEGG----REXATQTCY-NCNKXGHIX 451
EC Q PD S T GH CP+ +E + + + + N
Sbjct: 132 D---EC-QGPDSSSVRFQENTREEEEGHFEHQCPDSSSVCFQEISREEGFISLNSSSKST 187
Query: 452 RNCXDGXKTCYVCGKPGHIXREC 520
+ + CY C GHI R+C
Sbjct: 188 SKGRETRRLCYECKGKGHIARDC 210
Score = 37.9 bits (84), Expect = 0.005
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Frame = +2
Query: 110 SSSVCYKCN----RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR 277
SSSV ++ N GHF +C V +R+ E N + +E
Sbjct: 139 SSSVRFQENTREEEEGHFEHQCPDSSSVCFQE-ISRE-EGFISLNSSSKSTSKGRETRRL 196
Query: 278 CYRCNGTGHIARECAQS 328
CY C G GHIAR+C S
Sbjct: 197 CYECKGKGHIARDCPNS 213
Score = 30.7 bits (66), Expect = 0.77
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 47 SLNDRYISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVV 181
S + +IS+ S+ + + + +CY+C GH AR+C V
Sbjct: 172 SREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDCPNSSQV 216
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 50.8 bits (116), Expect = 7e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 215 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 331
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 47.6 bits (108), Expect = 6e-06
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +2
Query: 275 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIXRNC 385
RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
Score = 44.0 bits (99), Expect = 8e-05
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +2
Query: 329 PDEPSCYNCNKTGHIXRNCPEGGREXATQTCYNCNKXGHIXRNC 460
P C+NC GH R+C G + CY C + GHI RNC
Sbjct: 96 PGSGRCFNCGVDGHWARDCTAGDWK---NKCYRCGERGHIERNC 136
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Frame = +2
Query: 377 RNCPEGGREXATQ-------TCYNCNKXGHIXRNCXDGX--KTCYVCGKPGHIXREC 520
R P G R+ ++ C+NC GH R+C G CY CG+ GHI R C
Sbjct: 80 RGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
Score = 41.5 bits (93), Expect = 4e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +2
Query: 113 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 262
S C+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 98 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 137
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 50.8 bits (116), Expect = 7e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 215 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 331
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 47.6 bits (108), Expect = 6e-06
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +2
Query: 275 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIXRNC 385
RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 44.0 bits (99), Expect = 8e-05
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +2
Query: 329 PDEPSCYNCNKTGHIXRNCPEGGREXATQTCYNCNKXGHIXRNC 460
P C+NC GH R+C G + CY C + GHI RNC
Sbjct: 55 PGSGRCFNCGVDGHWARDCTAGDWK---NKCYRCGERGHIERNC 95
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Frame = +2
Query: 377 RNCPEGGREXATQ-------TCYNCNKXGHIXRNCXDGX--KTCYVCGKPGHIXREC 520
R P G R+ ++ C+NC GH R+C G CY CG+ GHI R C
Sbjct: 39 RGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 41.5 bits (93), Expect = 4e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +2
Query: 113 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 262
S C+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 57 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 96
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 50.8 bits (116), Expect = 7e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 215 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 331
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 49.6 bits (113), Expect = 2e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +2
Query: 269 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIXRNCPEGGREXATQTCYN 427
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 57 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 109
Score = 45.2 bits (102), Expect = 3e-05
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +2
Query: 329 PDEPSCYNCNKTGHIXRNCPEGGREXATQTCYNCNKXGHIXRNCXDGXK 475
P C+NC GH R+C G + CY C + GHI RNC + K
Sbjct: 55 PGAGRCFNCGVDGHWARDCTAGDWK---NKCYRCGERGHIERNCKNSPK 100
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Frame = +2
Query: 362 TGHIXRNCPEGGREXATQ-------TCYNCNKXGHIXRNCXDGX--KTCYVCGKPGHIXR 514
T R P G R+ ++ C+NC GH R+C G CY CG+ GHI R
Sbjct: 34 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 93
Query: 515 EC 520
C
Sbjct: 94 NC 95
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 286
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 60 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 104
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSG 196
CY+C GH R C R SG
Sbjct: 82 CYRCGERGHIERNCKNSPKKLRRSG 106
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 50.8 bits (116), Expect = 7e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 215 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 331
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 70 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 110
Score = 49.6 bits (113), Expect = 2e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +2
Query: 269 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIXRNCPEGGREXATQTCYN 427
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 68 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 120
Score = 45.2 bits (102), Expect = 3e-05
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +2
Query: 329 PDEPSCYNCNKTGHIXRNCPEGGREXATQTCYNCNKXGHIXRNCXDGXK 475
P C+NC GH R+C G + CY C + GHI RNC + K
Sbjct: 66 PGAGRCFNCGVDGHWARDCTAGDWK---NKCYRCGERGHIERNCKNSPK 111
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Frame = +2
Query: 362 TGHIXRNCPEGGREXATQ-------TCYNCNKXGHIXRNCXDGX--KTCYVCGKPGHIXR 514
T R P G R+ ++ C+NC GH R+C G CY CG+ GHI R
Sbjct: 45 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 104
Query: 515 EC 520
C
Sbjct: 105 NC 106
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 286
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 71 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 115
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSG 196
CY+C GH R C R SG
Sbjct: 93 CYRCGERGHIERNCKNSPKKLRRSG 117
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 50.8 bits (116), Expect = 7e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 215 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 331
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 49.6 bits (113), Expect = 2e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +2
Query: 269 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIXRNCPEGGREXATQTCYN 427
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 98 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 150
Score = 45.2 bits (102), Expect = 3e-05
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +2
Query: 329 PDEPSCYNCNKTGHIXRNCPEGGREXATQTCYNCNKXGHIXRNCXDGXK 475
P C+NC GH R+C G + CY C + GHI RNC + K
Sbjct: 96 PGAGRCFNCGVDGHWARDCTAGDWK---NKCYRCGERGHIERNCKNSPK 141
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Frame = +2
Query: 362 TGHIXRNCPEGGREXATQ-------TCYNCNKXGHIXRNCXDGX--KTCYVCGKPGHIXR 514
T R P G R+ ++ C+NC GH R+C G CY CG+ GHI R
Sbjct: 75 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 134
Query: 515 EC 520
C
Sbjct: 135 NC 136
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 286
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 101 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 145
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSG 196
CY+C GH R C R SG
Sbjct: 123 CYRCGERGHIERNCKNSPKKLRRSG 147
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 47.6 bits (108), Expect = 6e-06
Identities = 37/140 (26%), Positives = 53/140 (37%), Gaps = 12/140 (8%)
Frame = +2
Query: 137 RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARE 316
+TG F++ ++ RD + QR K + AR E+ + + N R
Sbjct: 200 KTGLFSKRMK---IIHRDPVLHAQRVAAIKKAKGTPAARKHASESMKAFFSNPVNREQRS 256
Query: 317 CAQSPDEPSCYNCNKTGHIXRNCPEGGREXATQ-TCYNCNKXGHIXRNC-------XDGX 472
+ + C NC + GH CPE G + C C GH R C G
Sbjct: 257 LSMKGTKFYCKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKSIVTKGI 316
Query: 473 KT----CYVCGKPGHIXREC 520
T C +CG+ GH R C
Sbjct: 317 STRYHKCGICGERGHNSRTC 336
Score = 43.6 bits (98), Expect = 1e-04
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQG-GVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGT 298
C C GH R C + +V++ G + + KC C GH +R C++ C+G
Sbjct: 292 CRGCGGKGHNRRTCPKSKSIVTK--GISTRYHKCGICGERGHNSRTCRKPTGVNPSCSGE 349
Query: 299 GHIARECAQSPDEPSCYNCNKTGHIXRNCP 388
+ E +C C K GH R CP
Sbjct: 350 N--SGEDGVGKITYACGFCKKMGHNVRTCP 377
Score = 37.9 bits (84), Expect = 0.005
Identities = 34/124 (27%), Positives = 45/124 (36%), Gaps = 11/124 (8%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD--------- 274
C C + GH C + G + D F +C C GH R C +
Sbjct: 266 CKNCGQEGHRRHYCPELGT-NADRKF-----RCRGCGGKGHNRRTCPKSKSIVTKGISTR 319
Query: 275 --RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIXRNCPEGGREXATQTCYNCNKXGHI 448
+C C GH +R C + P+ N + +G N E G T C C K GH
Sbjct: 320 YHKCGICGERGHNSRTCRK----PTGVNPSCSGE---NSGEDGVGKITYACGFCKKMGHN 372
Query: 449 XRNC 460
R C
Sbjct: 373 VRTC 376
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Frame = +2
Query: 419 CYNCNKXGHIXRNCX------DGXKTCYVCGKPGHIXRECDEARN 535
C NC + GH C D C CG GH R C ++++
Sbjct: 266 CKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKS 310
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQ-GGVVSRDSGFNRQRE-----------KCFKCNRTGHFARDC 259
C+KC GH AREC+Q GG S G R C+ C +GHFARDC
Sbjct: 138 CFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDC 195
Score = 46.4 bits (105), Expect = 1e-05
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Frame = +2
Query: 170 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP--S 343
GG S G CFKC GH AR+C + G G S
Sbjct: 122 GGRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLS 181
Query: 344 CYNCNKTGHIXRNCPEGG 397
CY+C ++GH R+C GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 44.4 bits (100), Expect = 6e-05
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +2
Query: 278 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIXRNCPEGGREXATQTCYNCNKXGHIXRN 457
C++C GH+AREC+Q Y+ G + GG +CY+C + GH R+
Sbjct: 138 CFKCGEPGHMARECSQGGGG---YSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARD 194
Query: 458 CXDG 469
C G
Sbjct: 195 CTSG 198
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +2
Query: 341 SCYNCNKTGHIXRNCPEGGREXATQTCYNCNKXGHIXRNCXDGXKTCYVCGKPGHIXREC 520
SC+ C + GH+ R C +GG + G G +CY CG+ GH R+C
Sbjct: 137 SCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGG-GGGGGGGGLSCYSCGESGHFARDC 195
Score = 37.5 bits (83), Expect = 0.007
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGG 175
CY C +GHFAR+CT GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 33.9 bits (74), Expect = 0.083
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 467 GXKTCYVCGKPGHIXRECDE 526
G +C+ CG+PGH+ REC +
Sbjct: 134 GDNSCFKCGEPGHMARECSQ 153
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 46.4 bits (105), Expect = 1e-05
Identities = 29/89 (32%), Positives = 35/89 (39%), Gaps = 12/89 (13%)
Frame = +2
Query: 170 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRC------------YRCNGTGHIAR 313
GG R G R C+KC GH ARDC E Y G G+
Sbjct: 116 GGYGGRGGG-GRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGG 174
Query: 314 ECAQSPDEPSCYNCNKTGHIXRNCPEGGR 400
SCY+C ++GH R+C GGR
Sbjct: 175 GRGGGGGGGSCYSCGESGHFARDCTSGGR 203
Score = 41.9 bits (94), Expect = 3e-04
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +2
Query: 116 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFA--RDCKEEADRCYRC 289
S CYKC GH AR+C++GG G + G+ R CY C
Sbjct: 129 SDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSC 188
Query: 290 NGTGHIAREC 319
+GH AR+C
Sbjct: 189 GESGHFARDC 198
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Frame = +2
Query: 344 CYNCNKTGHIXRNCPEGGREXATQTC-------YNCNKXGHIX--RNCXDGXKTCYVCGK 496
CY C + GH+ R+C EGG Y G+ R G +CY CG+
Sbjct: 131 CYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGE 190
Query: 497 PGHIXREC 520
GH R+C
Sbjct: 191 SGHFARDC 198
Score = 37.5 bits (83), Expect = 0.007
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGG 175
CY C +GHFAR+CT GG
Sbjct: 185 CYSCGESGHFARDCTSGG 202
Score = 34.7 bits (76), Expect = 0.047
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 467 GXKTCYVCGKPGHIXRECDE 526
G CY CG+PGH+ R+C E
Sbjct: 127 GGSDCYKCGEPGHMARDCSE 146
Score = 30.3 bits (65), Expect = 1.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 392 GGREXATQTCYNCNKXGHIXRNCXDG 469
GG CY C + GH+ R+C +G
Sbjct: 122 GGGGRGGSDCYKCGEPGHMARDCSEG 147
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 41.1 bits (92), Expect = 5e-04
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Frame = +2
Query: 332 DEPSCYNCNKTGHIXRNCPEGGR-EXATQTCYNCNKXGHIXRNCXDGXKT-------CYV 487
D +CY C K GH R+C + A TCY C++ GH C + CY
Sbjct: 32 DPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYW 91
Query: 488 CGKPGH 505
CG H
Sbjct: 92 CGNQDH 97
Score = 40.7 bits (91), Expect = 7e-04
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Frame = +2
Query: 278 CYRCNGTGHIAREC--AQSPDEP--SCYNCNKTGHIXRNCPEGGREXATQT--CYNCNKX 439
CY+C GH AR C P +CY C++ GH CP + CY C
Sbjct: 36 CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWCGNQ 95
Query: 440 GH 445
H
Sbjct: 96 DH 97
Score = 37.1 bits (82), Expect = 0.009
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 301
CYKC + GHFAR C VV++ + C+ C+ GH + C + R + N G
Sbjct: 36 CYKCGKLGHFARSC---HVVTQPT---TAYITCYFCSEEGHRSNGCPNK--RTDQVNPKG 87
Query: 302 H 304
H
Sbjct: 88 H 88
Score = 36.3 bits (80), Expect = 0.015
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Frame = +2
Query: 413 QTCYNCNKXGHIXRNCX------DGXKTCYVCGKPGHIXRECDEAR 532
+ CY C K GH R+C TCY C + GH C R
Sbjct: 34 RACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKR 79
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 452 RNCXDGXKTCYVCGKPGHIXREC 520
RN D + CY CGK GH R C
Sbjct: 28 RNDYD-PRACYKCGKLGHFARSC 49
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +2
Query: 170 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD 274
GG SR G ++CFKC R GH+ARDC D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135
Score = 31.5 bits (68), Expect = 0.44
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGG 175
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 30.7 bits (66), Expect = 0.77
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 239 GHFARDCKEEADRCYRCNGTGHIARECAQSPDE 337
G ++ K D C++C GH AR+C + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
Score = 29.1 bits (62), Expect = 2.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 335 EPSCYNCNKTGHIXRNCPEGG 397
E C+ C + GH R+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +2
Query: 170 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD 274
GG SR G ++CFKC R GH+ARDC D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135
Score = 31.5 bits (68), Expect = 0.44
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGG 175
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 30.7 bits (66), Expect = 0.77
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 239 GHFARDCKEEADRCYRCNGTGHIARECAQSPDE 337
G ++ K D C++C GH AR+C + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
Score = 29.1 bits (62), Expect = 2.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 335 EPSCYNCNKTGHIXRNCPEGG 397
E C+ C + GH R+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 9/40 (22%)
Frame = +2
Query: 185 RDSGFNRQREK---------CFKCNRTGHFARDCKEEADR 277
RD G++R R + CFKC + GHFAR+C E+ R
Sbjct: 100 RDRGYDRDRSRPSGGRGGGDCFKCGKPGHFARECPSESSR 139
Score = 34.3 bits (75), Expect = 0.063
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSG 196
C+KC + GHFAREC SRD G
Sbjct: 120 CFKCGKPGHFARECPSES--SRDGG 142
Score = 32.7 bits (71), Expect = 0.19
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 467 GXKTCYVCGKPGHIXREC 520
G C+ CGKPGH REC
Sbjct: 116 GGGDCFKCGKPGHFAREC 133
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 377 RNCPEGGREXATQTCYNCNKXGHIXRNC 460
R+ P GGR C+ C K GH R C
Sbjct: 108 RSRPSGGRGGGD--CFKCGKPGHFAREC 133
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Frame = +2
Query: 344 CYNCNKTGHIXRNCP-EGGRE 403
C+ C K GH R CP E R+
Sbjct: 120 CFKCGKPGHFARECPSESSRD 140
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 167 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 319
QGG RD+ +R R++ + +R+ C++C GH AREC
Sbjct: 87 QGGA-GRDNDGDRGRDRGYDRDRSRPSGG---RGGGDCFKCGKPGHFAREC 133
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 107 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 211
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 32.7 bits (71), Expect = 0.19
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 167 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 262
+GG R G + KC++C GHFAR+C+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECR 105
Score = 31.5 bits (68), Expect = 0.44
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +2
Query: 179 VSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 319
+ R +G+ + K R G R E +CY C GH AREC
Sbjct: 58 LDRKNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 479 CYVCGKPGHIXRECDEAR 532
CY CG+ GH REC R
Sbjct: 91 CYECGELGHFARECRRGR 108
Score = 27.9 bits (59), Expect = 5.4
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +2
Query: 332 DEPSCYNCNKTGHIXRNCPEG 394
++ CY C + GH R C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Frame = +2
Query: 392 GGREXATQT--CYNCNKXGHIXRNCXDG 469
GGR + CY C + GH R C G
Sbjct: 80 GGRRGGIEDSKCYECGELGHFARECRRG 107
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 107 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 211
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 32.7 bits (71), Expect = 0.19
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 167 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 262
+GG R G + KC++C GHFAR+C+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECR 105
Score = 31.5 bits (68), Expect = 0.44
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +2
Query: 179 VSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 319
+ R +G+ + K R G R E +CY C GH AREC
Sbjct: 58 LDRKNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 479 CYVCGKPGHIXRECDEAR 532
CY CG+ GH REC R
Sbjct: 91 CYECGELGHFARECRRGR 108
Score = 27.9 bits (59), Expect = 5.4
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +2
Query: 332 DEPSCYNCNKTGHIXRNCPEG 394
++ CY C + GH R C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Frame = +2
Query: 392 GGREXATQT--CYNCNKXGHIXRNCXDG 469
GGR + CY C + GH R C G
Sbjct: 80 GGRRGGIEDSKCYECGELGHFARECRRG 107
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 37.9 bits (84), Expect = 0.005
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSGFNRQR 211
CY+C TGHFAREC G R +R R
Sbjct: 101 CYECGETGHFARECRNRGGTGRRRSKSRSR 130
Score = 33.9 bits (74), Expect = 0.083
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +2
Query: 215 KCFKCNRTGHFARDCK 262
KC++C TGHFAR+C+
Sbjct: 100 KCYECGETGHFARECR 115
Score = 31.1 bits (67), Expect = 0.58
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 275 RCYRCNGTGHIAREC 319
+CY C TGH AREC
Sbjct: 100 KCYECGETGHFAREC 114
Score = 29.5 bits (63), Expect = 1.8
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +2
Query: 392 GGREXATQTCYNCNKXGHIXRNC 460
GGR + CY C + GH R C
Sbjct: 92 GGRGGSDLKCYECGETGHFAREC 114
Score = 28.7 bits (61), Expect = 3.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 479 CYVCGKPGHIXREC 520
CY CG+ GH REC
Sbjct: 101 CYECGETGHFAREC 114
Score = 28.3 bits (60), Expect = 4.1
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +2
Query: 344 CYNCNKTGHIXRNCPEGG 397
CY C +TGH R C G
Sbjct: 101 CYECGETGHFARECRNRG 118
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 37.1 bits (82), Expect = 0.009
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +2
Query: 206 QREKCFKCNRTGHFARDC 259
Q+EKCF C +TGHFA DC
Sbjct: 261 QQEKCFVCGQTGHFASDC 278
Score = 27.9 bits (59), Expect = 5.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 122 CYKCNRTGHFAREC 163
C+ C +TGHFA +C
Sbjct: 265 CFVCGQTGHFASDC 278
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +2
Query: 305 IARECAQSP-DEPSCYNCNKTGHIXRNCP 388
I RE P + C+ C +TGH +CP
Sbjct: 251 ILREVITYPGQQEKCFVCGQTGHFASDCP 279
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 35.5 bits (78), Expect = 0.027
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 122 CYKCNRTGHFAREC-TQGGVVSRDSGFNRQR 211
CY+C +GHFAREC ++GG R +R R
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSR 128
Score = 32.7 bits (71), Expect = 0.19
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 170 GGVVSRDSGFNRQRE--KCFKCNRTGHFARDCK 262
GG D G R KC++C +GHFAR+C+
Sbjct: 80 GGRGGGDGGRGRGGSDLKCYECGESGHFARECR 112
Score = 29.5 bits (63), Expect = 1.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 275 RCYRCNGTGHIAREC 319
+CY C +GH AREC
Sbjct: 97 KCYECGESGHFAREC 111
Score = 28.7 bits (61), Expect = 3.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 479 CYVCGKPGHIXREC 520
CY CG+ GH REC
Sbjct: 98 CYECGESGHFAREC 111
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +2
Query: 395 GREXATQTCYNCNKXGHIXRNC 460
GR + CY C + GH R C
Sbjct: 90 GRGGSDLKCYECGESGHFAREC 111
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 34.7 bits (76), Expect = 0.047
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 212 EKCFKCNRTGHFARDC 259
++CFKC R GH+ARDC
Sbjct: 126 DECFKCGRVGHWARDC 141
Score = 32.7 bits (71), Expect = 0.19
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGG 175
C+KC R GH+AR+C G
Sbjct: 128 CFKCGRVGHWARDCPSAG 145
Score = 30.3 bits (65), Expect = 1.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 335 EPSCYNCNKTGHIXRNCPEGG 397
E C+ C + GH R+CP G
Sbjct: 125 EDECFKCGRVGHWARDCPSAG 145
Score = 27.5 bits (58), Expect = 7.2
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 272 DRCYRCNGTGHIAREC 319
D C++C GH AR+C
Sbjct: 126 DECFKCGRVGHWARDC 141
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 467 GXKTCYVCGKPGHIXRECDEA 529
G C+ CG+ GH R+C A
Sbjct: 124 GEDECFKCGRVGHWARDCPSA 144
>At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 260
Score = 33.5 bits (73), Expect = 0.11
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +2
Query: 416 TCYNCNKXGHIXRNCX---DGXKTCYVCGKPGHIXREC 520
TCY+C + HI +C + K+C++C H R+C
Sbjct: 144 TCYSCGEKDHITVSCPTLTNCRKSCFICASLEHGARQC 181
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 33.1 bits (72), Expect = 0.14
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +2
Query: 218 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIXRNCP 388
CF C + GH RDC E D R + +I+ + C C + H CP
Sbjct: 604 CFYCGKKGHCLRDCLEVTDTELR-DLVQNISVRNGREEASSLCIRCFQLSHWAATCP 659
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 16/71 (22%)
Frame = +2
Query: 296 TGHIARECAQSPDEPSCYNCNKTGHIXRNCPE----------------GGREXATQTCYN 427
+G +A + + C+ C K GH R+C E GRE A+ C
Sbjct: 588 SGSLAENAEEEQRDLICFYCGKKGHCLRDCLEVTDTELRDLVQNISVRNGREEASSLCIR 647
Query: 428 CNKXGHIXRNC 460
C + H C
Sbjct: 648 CFQLSHWAATC 658
Score = 27.9 bits (59), Expect = 5.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 479 CYVCGKPGHIXRECDE 526
C+ CGK GH R+C E
Sbjct: 604 CFYCGKKGHCLRDCLE 619
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Frame = +2
Query: 119 VCYKCNRTGHFARECTQ------GGVVSRDSGFNRQREK---CFKCNRTGHFARDC 259
+C+ C + GH R+C + +V S N + E C +C + H+A C
Sbjct: 603 ICFYCGKKGHCLRDCLEVTDTELRDLVQNISVRNGREEASSLCIRCFQLSHWAATC 658
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 33.1 bits (72), Expect = 0.14
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 218 CFKCNRTGHFARDCKEEA 271
CFKC R GH++RDC A
Sbjct: 8 CFKCGRPGHWSRDCPSSA 25
Score = 29.9 bits (64), Expect = 1.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVS 184
C+KC R GH++R+C V+
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVA 28
Score = 28.3 bits (60), Expect = 4.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 479 CYVCGKPGHIXREC 520
C+ CG+PGH R+C
Sbjct: 8 CFKCGRPGHWSRDC 21
>At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)
identical to SP|Q9SI64 Arginine decarboxylase 1 (EC
4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) {Arabidopsis
thaliana}
Length = 702
Score = 31.9 bits (69), Expect = 0.33
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +1
Query: 331 GRAVVLQLQQDGPHRTELSRGGAGVRDADLL*LQQVRPHL 450
G +VV LQ DGPH ++R G AD+L Q P L
Sbjct: 578 GPSVVRVLQSDGPHGFAVTRAVMGQSSADVLRAMQHEPEL 617
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 31.9 bits (69), Expect = 0.33
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 206 QREKCFKCNRTGHFARDCK 262
Q+E+CF C + GHFA +C+
Sbjct: 260 QQERCFLCGQMGHFASNCE 278
>At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 373
Score = 31.5 bits (68), Expect = 0.44
Identities = 21/72 (29%), Positives = 24/72 (33%), Gaps = 11/72 (15%)
Frame = +2
Query: 311 RECAQSPDEPSCYNCNKTGHIXRNCPE---GGREXATQTCYNCNKXGHIXR--------N 457
R C + C NC H +C E GRE T C H +
Sbjct: 267 RRCCYKCRKHFCINCKVPWHSNLSCKEHKSSGREPITTVWRQCRSCLHKIKLSEERMPVT 326
Query: 458 CXDGXKTCYVCG 493
C G K CY CG
Sbjct: 327 CRCGYKFCYACG 338
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 31.1 bits (67), Expect = 0.58
Identities = 32/148 (21%), Positives = 49/148 (33%), Gaps = 11/148 (7%)
Frame = +2
Query: 110 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNR-QREKCFKCNRTGHFARDCKEEADRCYR 286
+S Y N T E GG + G + +R C++C GH + C +
Sbjct: 444 NSGDSYYMNETYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTACPIKLQNTSH 503
Query: 287 CNGT-GHIARECAQSPDEPSCYNCNKTGHIXRNCPEGGREXATQT------CYNCNKXGH 445
N T H E P + + Y+ K N + + T N
Sbjct: 504 TNSTLDHQTVEA--GPTQVTSYSLQKKTRDTENNGGSFMDESYATVPISIDVTNGANDAS 561
Query: 446 IXRNCXDG---XKTCYVCGKPGHIXREC 520
+ G + CY CG+ GH+ C
Sbjct: 562 LTSAVSTGKIKKRNCYECGEKGHLSSAC 589
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 30.7 bits (66), Expect = 0.77
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 386 PEGGREXATQTCYNCNKXGHIXRNC 460
P + A + CY C K GH+ R+C
Sbjct: 915 PSEETDDAVKICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 0.77
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 119 VCYKCNRTGHFAREC 163
+CY+C + GH AR+C
Sbjct: 925 ICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 0.77
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = +2
Query: 218 CFKCNRTGHFARDC--KEEAD 274
C++C + GH ARDC KE +D
Sbjct: 926 CYRCKKVGHLARDCHGKETSD 946
Score = 29.9 bits (64), Expect = 1.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 278 CYRCNGTGHIAREC 319
CYRC GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
Score = 29.5 bits (63), Expect = 1.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 464 DGXKTCYVCGKPGHIXREC 520
D K CY C K GH+ R+C
Sbjct: 921 DAVKICYRCKKVGHLARDC 939
Score = 28.3 bits (60), Expect = 4.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 344 CYNCNKTGHIXRNC 385
CY C K GH+ R+C
Sbjct: 926 CYRCKKVGHLARDC 939
>At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar to
Chaperone protein dnaJ (SP:Q9WZV3) [Thermotoga maritima]
Length = 97
Score = 30.7 bits (66), Expect = 0.77
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 275 RCYRCNGTGHIARECAQ-SPDEPSCYNCNKTGH-IXRNCPEGG 397
RC CNGTG + C++ S + C C+ +G NC G
Sbjct: 37 RCPTCNGTGRVTCFCSRWSDGDVGCRRCSGSGRAACSNCGGSG 79
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 284 RCNGTGHIARECAQSPDEPSCYNCNKTGHIXRNCPEGG 397
R NG G E P C+ CN GH ++CP G
Sbjct: 191 RMNGRG-FGMERKTPPPGYVCHRCNIPGHFIQHCPTNG 227
Score = 28.7 bits (61), Expect = 3.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 119 VCYKCNRTGHFARECTQGG 175
VC++CN GHF + C G
Sbjct: 209 VCHRCNIPGHFIQHCPTNG 227
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +2
Query: 263 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIXRNCPEGG 397
++ RC+ C G H REC + D + + K RN G
Sbjct: 238 DDPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKSKRNQNSSG 282
>At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 341
Score = 30.3 bits (65), Expect = 1.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 92 SKPIAMSSSVCYKCNRTGHFAREC 163
+KP + SVCY+C H+A+ C
Sbjct: 268 NKPRGKAKSVCYRCGMDDHWAKTC 291
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 30.3 bits (65), Expect = 1.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 119 VCYKCNRTGHFARECTQGG 175
VC++CN +GHF + C+ G
Sbjct: 120 VCHRCNVSGHFIQHCSTNG 138
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Frame = +2
Query: 278 CYRCNGTGHIARECA-QSPDEP------SCYNCNKTGHIXRNCP 388
C C T H+ +C SP P CY C GH+ CP
Sbjct: 287 CDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVSMYCP 330
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 9/46 (19%)
Frame = +2
Query: 209 REKCFKCNRTGHFARDC---------KEEADRCYRCNGTGHIAREC 319
+ C C T H DC + +CY C G GH++ C
Sbjct: 284 KRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVSMYC 329
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +2
Query: 263 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIXRNCPEGGR 400
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +2
Query: 215 KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDE--PSCY 349
+CF C H R+C DR N R+ Q+P PS Y
Sbjct: 197 RCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSRLPSRY 243
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +2
Query: 263 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIXRNCPEGGR 400
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +2
Query: 215 KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDE--PSCY 349
+CF C H R+C DR N R+ Q+P PS Y
Sbjct: 197 RCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSRLPSRY 243
>At5g08730.1 68418.m01037 IBR domain-containing protein contains
similarity to Swiss-Prot:Q94981 ariadne-1 protein
(Ari-1) [Drosophila melanogaster]
Length = 500
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +2
Query: 383 CPEGGREXATQTCYNCNKXGHIXRNCXDGXKTCYVCGKPGHIXRECDEA 529
CP G E A + + N+ I C G C+ CG H C +A
Sbjct: 169 CPASGCEYAVELQEDGNEDNVISVVCLCGHTFCWTCGLESHRPVSCKKA 217
>At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 331 GRAVVLQLQQDGPHRTELSRGGAGVRDADLL*LQQVRPHL 450
G +VV Q DGPH ++R G AD+L Q P L
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPEL 629
>At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 331 GRAVVLQLQQDGPHRTELSRGGAGVRDADLL*LQQVRPHL 450
G +VV Q DGPH ++R G AD+L Q P L
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPEL 629
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.9 bits (64), Expect = 1.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 260 KEEADRCYRCNGTGHIARECAQSP 331
K + + C++C T HIA++C P
Sbjct: 336 KGKGNGCFKCGSTDHIAKDCVGGP 359
Score = 28.7 bits (61), Expect = 3.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 218 CFKCNRTGHFARDC 259
CFKC T H A+DC
Sbjct: 342 CFKCGSTDHIAKDC 355
Score = 27.5 bits (58), Expect = 7.2
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQG 172
C+KC T H A++C G
Sbjct: 342 CFKCGSTDHIAKDCVGG 358
>At2g16690.1 68415.m01915 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 240
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 170 GGVVSRDSGFNRQREKCFKCNRTGHFARDC 259
G VVS + R R++CF C R H DC
Sbjct: 188 GEVVSVTFDYERIRKRCFFCQRLTHDKADC 217
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Frame = +2
Query: 137 RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARD---------CKEEADRCYRC 289
R+ + C + G ++ + ++E C K + A + C EE +R C
Sbjct: 778 RSNKDKQSCDKKGAKNKTRAEDDKQENCHKLSENNKTASEMLVSGTKVSCHEENNRVMNC 837
Query: 290 NGTGHIARECA 322
NG G +A E A
Sbjct: 838 NGRGSVAGEMA 848
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 305 IARECAQSPDEP-SCYNCNKTGHIXRNCPEGGREXATQTCYNCNKXGHIXRN 457
++R+ ++S E +C+ C + GH +CP E + Y + RN
Sbjct: 147 VSRDRSKSKGEKGACWICGEDGHYKNDCPSRNSEKPKEHAYKAQEASVPRRN 198
>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
contains Pfam profile: PF00098 zinc knuckle
Length = 262
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Frame = +2
Query: 344 CYNCNKTGHIXRNC-------PEGGREXATQTCYNCNKXGHIXRNCXDG 469
C+NC H+ RNC P+ + + N G NC DG
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDG 136
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 10/55 (18%)
Frame = +2
Query: 278 CYRCNGTGHIAREC----AQSPD------EPSCYNCNKTGHIXRNCPEGGREXAT 412
C+ C H+AR C PD P + N G NC +GG T
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDGGTSSGT 142
>At2g41570.1 68415.m05137 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 418
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 170 GGVVSRDSGFNRQREKCFKCNRTGHFARDC 259
G +VS + R R++CF C R H DC
Sbjct: 188 GEIVSVTFDYERIRKRCFLCQRLTHEKGDC 217
>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
[Methylovorus sp.]
Length = 419
Score = 29.1 bits (62), Expect = 2.4
Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 5/87 (5%)
Frame = +2
Query: 263 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIXRNCPEG---GREXATQTCYNCN 433
E ++C C G G + + EP Y N+ G ++ + C NCN
Sbjct: 196 ETVEKCTGCTGRGDVVCPTCNADGEPGFYKENQMMKCSTCYGRGLVAHKDGSDTICTNCN 255
Query: 434 KXGHI-XRNCXD-GXKTCYVCGKPGHI 508
G + C G C C G +
Sbjct: 256 GKGKLPCPTCQSRGLIKCQTCDSTGSL 282
>At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical to
XRN2 [Arabidopsis thaliana] GI:11875630; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 1012
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 197 FNRQREKCFKCNRTGHFARDCKEEADR 277
F + KCF C + GH A DC+ + R
Sbjct: 259 FPGEEGKCFLCGQEGHRAADCEGKIKR 285
>At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 735
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 11/59 (18%)
Frame = +2
Query: 338 PSCYNCNKTGHIXRNCPEGGREXAT-----------QTCYNCNKXGHIXRNCXDGXKTC 481
P C++C GHI C RE CY+ GHI RNC + C
Sbjct: 626 PVCHHCGVVGHIRPRCFRLLREKNRLMNAYDVRFHGPKCYHYGVQGHIKRNCFRFIREC 684
Score = 27.9 bits (59), Expect = 5.4
Identities = 23/76 (30%), Positives = 29/76 (38%)
Frame = +2
Query: 92 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA 271
S+P + VC+ C GH C F REK NR + A D +
Sbjct: 618 SEPRRVFRPVCHHCGVVGHIRPRC-----------FRLLREK----NRLMN-AYDVRFHG 661
Query: 272 DRCYRCNGTGHIAREC 319
+CY GHI R C
Sbjct: 662 PKCYHYGVQGHIKRNC 677
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 335 EPSCYNCNKTGHIXRNCPEGGREXATQ 415
E +CY C + GHI + CP RE T+
Sbjct: 224 ELTCYRCKQEGHIAKICPT--RETTTK 248
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 278 CYRCNGTGHIAREC 319
CYRC GHIA+ C
Sbjct: 227 CYRCKQEGHIAKIC 240
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 28.7 bits (61), Expect = 3.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 107 MSSSVCYKCNRTGHFAREC 163
MSS C+ C++ GH+A+ C
Sbjct: 1 MSSGDCFHCHQPGHWAKNC 19
Score = 27.1 bits (57), Expect = 9.5
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +2
Query: 344 CYNCNKTGHIXRNCP 388
C++C++ GH +NCP
Sbjct: 6 CFHCHQPGHWAKNCP 20
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 28.3 bits (60), Expect = 4.1
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +2
Query: 476 TCYVCGKPGHIXRECDEAR 532
+C++CGK GH +C + R
Sbjct: 727 SCFICGKSGHRATDCPDKR 745
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 80 AQEF-SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRD 190
A EF K + S CY+C GH + EC + + R+
Sbjct: 139 ASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRE 176
Score = 28.3 bits (60), Expect = 4.1
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 263 EEADRCYRCNGTGHIARECAQS 328
++ RCY C GH++ EC ++
Sbjct: 149 KDKSRCYECGDEGHLSYECPKN 170
Score = 27.5 bits (58), Expect = 7.2
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +2
Query: 332 DEPSCYNCNKTGHIXRNCPE 391
D+ CY C GH+ CP+
Sbjct: 150 DKSRCYECGDEGHLSYECPK 169
>At1g40080.1 68414.m04737 hypothetical protein member of
hypothetical protein common family
Length = 154
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Frame = +2
Query: 212 EKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSP--DEPSCYNCNKTGHIXRNC 385
+KC N +A+ ++ Y TG+ C + D+P + N +
Sbjct: 71 QKCLGANNP--YAKFVEKNKGLAYEST-TGYYQMRCRWNVTHDKPVFIDMNNEKRCIMHP 127
Query: 386 PEGGREXATQTCYNCNKXGHIXRNC 460
P +TC+ C K GH + C
Sbjct: 128 PFQPGRMVRRTCHRCKKVGHRCKKC 152
>At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 275
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 50 LNDRYISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGV-VSRDS 193
L +R +SA A ++S C KC + GH+ EC V +SR S
Sbjct: 77 LGERKDKTMSASAVGSS-ASAASQCQKCFQAGHWTYECKNERVYISRPS 124
>At4g06479.1 68417.m00885 hypothetical protein
Length = 370
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 7/43 (16%)
Frame = +2
Query: 278 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIXRNC 385
C C+ T H EC P D CY C GH+ C
Sbjct: 298 CEICSHTDHPTEECLYPPQTIPYTDDYAKCYYCEGMGHMSMYC 340
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 9/46 (19%)
Frame = +2
Query: 209 REKCFKCNRTGHFARDC---------KEEADRCYRCNGTGHIAREC 319
+ C C+ T H +C ++ +CY C G GH++ C
Sbjct: 295 KRPCEICSHTDHPTEECLYPPQTIPYTDDYAKCYYCEGMGHMSMYC 340
>At2g32000.1 68415.m03910 DNA topoisomerase family protein similar
to DNA topoisomerase III beta-1 (EC 5.99.1.2)(SP:Q9Z321)
{Mus musculus}
Length = 865
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -2
Query: 413 ASRTPAPPRDSSVRCGPSCCSCNTTARPGSVRTRALCA 300
AS+TP P + G C C SVR + +CA
Sbjct: 701 ASKTPNAPAKTKTGAGMPCSLCPHPTCQHSVRNQGVCA 738
>At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains
Pfam PF00684 : DnaJ central domain (4 repeats); similar
to bundle sheath defective protein 2 (GI:4732091) [Zea
mays]
Length = 154
Score = 27.5 bits (58), Expect = 7.2
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +2
Query: 260 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIXRNCPEGGREXATQTCYNCNKX 439
+E C+ CNGTG AQ C C +G++ GG E C NC+
Sbjct: 81 RENTQPCFPCNGTG------AQ-----KCRLCVGSGNV--TVELGGGEKEVSNCINCDGA 127
Query: 440 GHI 448
G +
Sbjct: 128 GSL 130
>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
[Drosophila melanogaster]
Length = 926
Score = 27.1 bits (57), Expect = 9.5
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Frame = +2
Query: 113 SSVCYKCNRTGHFARECTQGGVVSRDS---GFN-RQREKCFKCNRTGH--FARDCKEEAD 274
S+VC C + GH + C SR+S N R E CN G R EA+
Sbjct: 764 SNVCIHCQQRGHASTNCPSRVPASRNSRPTATNPRNDESTVSCNTCGSQCVLRTANTEAN 823
Query: 275 R 277
R
Sbjct: 824 R 824
>At5g47390.1 68418.m05840 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 365
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +2
Query: 344 CYNCNKTGHIXRNCPEGG 397
C +CN GH R CP G
Sbjct: 5 CSHCNHNGHNSRTCPNRG 22
>At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 516
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +2
Query: 212 EKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 319
E+C + + DC +CY C G GH++ C
Sbjct: 347 EQCLHPPQAMPYMVDCA----KCYSCGGVGHVSMYC 378
>At5g32613.1 68418.m03881 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 457
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +2
Query: 299 GHIARECAQSP-DEPSCYNCNKTGHIXRNC 385
G+ AR P P C NC + GH+ C
Sbjct: 299 GNTARVAVTYPRPPPKCLNCGRYGHLLSRC 328
>At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 415
Score = 27.1 bits (57), Expect = 9.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 206 QREKCFKCNRTGHFARDC 259
Q CF+C + GH+ DC
Sbjct: 7 QTGDCFRCRQAGHWINDC 24
>At4g10630.1 68417.m01737 glutaredoxin family protein contains Pfam
profile PF00462: Glutaredoxin
Length = 334
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 278 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIXRNCP 388
C+RCNG+ + + + C CN+ G + CP
Sbjct: 297 CFRCNGSCKMVKGWGSASVVVRCNECNENGLVP--CP 331
>At4g06526.1 68417.m00938 hypothetical protein
Length = 506
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 7/44 (15%)
Frame = +2
Query: 278 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIXRNCP 388
C C+ T H +EC P D C C GH+ CP
Sbjct: 282 CEICSHTDHPTKECLYPPHTMPYMDDCAKCSCCGGVGHMSMYCP 325
>At2g19650.1 68415.m02296 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 682
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -2
Query: 371 CGPSCCSCNTTARPGSVRTRALCAPCRYICS 279
C P CC CN+ + VRT Y CS
Sbjct: 638 CRPLCCVCNSRCKLPFVRTLPEDGADLYFCS 668
>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to phosphatidylinositol
3,5-kinase [Candida albicans] GI:14571648; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1648
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = +2
Query: 251 RDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIXRNCPEGGREXATQTCYN 427
RDC+ A RCY G AR C + PS N + I E G A ++
Sbjct: 126 RDCRNMASIRCYPSRGEEEEARYCGKQLLSPSSDNYQDSSDI-----ESGSVSARHELFS 180
Query: 428 C 430
C
Sbjct: 181 C 181
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,387,269
Number of Sequences: 28952
Number of extensions: 200462
Number of successful extensions: 1268
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -