Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0009
(751 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g27690.1 68418.m03321 heavy-metal-associated domain-containin... 32 0.47
At2g22795.1 68415.m02704 expressed protein 31 0.82
At2g21235.1 68415.m02522 bZIP protein-related similar to VirE2-i... 31 0.82
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 31 1.1
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c... 30 1.4
At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid t... 30 1.9
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 29 2.5
At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin; g... 29 4.4
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 28 5.8
At5g31873.1 68418.m03777 hypothetical protein 28 7.6
At5g28120.1 68418.m03396 hypothetical protein 28 7.6
At5g28110.1 68418.m03395 hypothetical protein 28 7.6
At3g30816.1 68416.m03949 hypothetical protein 28 7.6
At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family ... 28 7.6
>At5g27690.1 68418.m03321 heavy-metal-associated domain-containing
protein very low similarity to copper homeostasis factor
from Arabidopsis thaliana [gi:3168840]; contains Pfam
heavy metal associated domain PF00403
Length = 352
Score = 31.9 bits (69), Expect = 0.47
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Frame = +3
Query: 414 IHSAP----VLHSAP--VVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
I+SAP ++H P + H H P +HS P H + GP + S YH P
Sbjct: 214 IYSAPQDHHIIHGPPPHLHHHQQQNHPYPTVHSPPRHHPQQMYGPGPGLPPPSFYHTQP 272
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 31.1 bits (67), Expect = 0.82
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = -2
Query: 594 REELSVQEEWRGTETLCGQRGRSELGERSEPRERSEL-GERSEPQGLNELQGQSEALEQS 418
+EE S QEE + ET ++ S E ++ +E ++ E S PQ + + ++E +E+
Sbjct: 549 KEEASSQEESKENETETKEKEESSSQEETKEKENEKIEKEESAPQEETK-EKENEKIEKE 607
Query: 417 ESQGQ 403
ES Q
Sbjct: 608 ESASQ 612
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/64 (29%), Positives = 34/64 (53%)
Frame = -2
Query: 600 RAREELSVQEEWRGTETLCGQRGRSELGERSEPRERSELGERSEPQGLNELQGQSEALEQ 421
+ +EE S QEE ET ++ S E++E +E ++ E S + E + +++ E+
Sbjct: 455 KEKEESSSQEETMDKETEAKEKVESSSQEKNEDKETEKI-ESSFLEETKEKEDETKEKEE 513
Query: 420 SESQ 409
S SQ
Sbjct: 514 SSSQ 517
>At2g21235.1 68415.m02522 bZIP protein-related similar to
VirE2-interacting protein VIP1 [Arabidopsis thaliana]
GI:7258340, tbZIP transcription factor [Arabidopsis
thaliana] GI:17065884
Length = 550
Score = 31.1 bits (67), Expect = 0.82
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +3
Query: 414 IHSAPVLH---SAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPV 539
IH +PVL APV S P+V S+P H +P H + + P+
Sbjct: 217 IHRSPVLSVLPPAPVYSSNPMVRSSPPGHPSPSAHLEEMSNRPPL 261
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 429 VLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
++H +PV+ P AP+ S P+V S+P H P H + + P
Sbjct: 216 LIHRSPVLSVLP---PAPVYSSNPMVRSSPPGHPSPSAHLEEMSNRPP 260
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +1
Query: 88 QLPSNTPIMSKIMLPRSMSSHIPSRIPTPAI-----TSPNTKPV 204
Q P+ + S++ P S S+ PS+ PTP + +PN+KPV
Sbjct: 726 QAPTTSSETSQVPTPSSESNQSPSQAPTPILEPVHAPTPNSKPV 769
>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
contains Pfam PF01422: NF-X1 type zinc finger; similar
to transcriptional repressor NF-X1 (SP:Q12986) [Homo
sapiens]; similar to EST gb|T21002
Length = 1188
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/52 (40%), Positives = 25/52 (48%)
Frame = -2
Query: 291 RCGGQLCIRPCGWNHQAGVESIRLSRHHHHGFRVGTCDRRCGDPRRNMRTHT 136
RCG C R C H +S S G RV TC ++CG PR + R HT
Sbjct: 720 RCGMHACARTC---HPEPCDSFNESEA---GMRV-TCRQKCGAPRTDCR-HT 763
>At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to auxin
down regulated GB:X69640 GI:296442 from [Glycine max];
contains Pfam profile PF00234: Protease inhibitor/seed
storage/LTP family
Length = 297
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 438 SAPVVHSTPVV-HSAPLIHSAPVVHSAPLVHSGPV 539
S PVV PVV P+I PVV+ P+V P+
Sbjct: 88 SPPVVRPPPVVVRPPPIIRPPPVVYPPPIVRPPPI 122
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 420 SAPVLHSAP-VVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVV 542
S PV+ P VV P++ P+++ P+V P+ P++
Sbjct: 88 SPPVVRPPPVVVRPPPIIRPPPVVYPPPIVRPPPITRP-PII 128
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = -2
Query: 603 RRAREELSVQEEWRGTETLCGQRGRSELGERSEPRERSELGERSEPQGLNELQGQSEALE 424
RR+R+ + R E +R RS RSE R RSE +SE + + + +S++
Sbjct: 128 RRSRDRDRRRSRDRDREVRHRRRSRSRSRSRSERRSRSEHRHKSEHRSRSRSRSRSKSKR 187
Query: 423 QS 418
+S
Sbjct: 188 RS 189
>At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin;
glycine-rich protein 18 (GRP18) PMID:11431566;
Length = 228
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3
Query: 423 APVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGP 536
AP +AP + P +AP +AP +AP + P
Sbjct: 181 APAAEAAPAAGAAPAAGAAPAAGAAPAAGAAPAAGAAP 218
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 103 TPIMSKIMLPRSMSSHIPSRIPTPAITSPNTKPVMVMS*KANTLYSSLMVPS 258
+PI S P + S+ S +PA+TSP T P + A++ S P+
Sbjct: 23 SPISSPTKSPTTPSAPTTSPTKSPAVTSPTTAPAKTPTASASSPVESPKSPA 74
>At5g31873.1 68418.m03777 hypothetical protein
Length = 271
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 177 RRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG 46
+R DPR N+R R H L +D V + G+ + HVA G
Sbjct: 196 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 238
>At5g28120.1 68418.m03396 hypothetical protein
Length = 506
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 177 RRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG 46
+R DPR N+R R H L +D V + G+ + HVA G
Sbjct: 394 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 436
>At5g28110.1 68418.m03395 hypothetical protein
Length = 493
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 177 RRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG 46
+R DPR N+R R H L +D V + G+ + HVA G
Sbjct: 394 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 436
>At3g30816.1 68416.m03949 hypothetical protein
Length = 342
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 177 RRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG 46
+R DPR N+R R H L +D V + G+ + HVA G
Sbjct: 231 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 273
>At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family
protein / snRNP family protein contains similarity to
U4/U6 small nuclear ribonucleoprotein hPrp3 [Homo
sapiens] gi|2708307|gb|AAC51926
Length = 786
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 540 QRGRS-ELGERSEPRERSELGERSEPQGLNELQGQSEALEQSESQG 406
+RGRS E GER R+R + +G E + +S+ ++ E G
Sbjct: 64 RRGRSVERGEREGSRDREKHHHERSHEGSKEKESRSKRKDREEENG 109
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,445,098
Number of Sequences: 28952
Number of extensions: 242165
Number of successful extensions: 1076
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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