Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0105
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger) fa...    33   0.22 
At4g16090.1 68417.m02439 hypothetical protein contains Pfam prof...    32   0.39 
At4g13100.2 68417.m02042 zinc finger (C3HC4-type RING finger) fa...    31   0.51 
At4g13100.1 68417.m02041 zinc finger (C3HC4-type RING finger) fa...    31   0.51 
At3g25030.1 68416.m03128 zinc finger (C3HC4-type RING finger) fa...    31   0.51 
At1g62370.1 68414.m07037 zinc finger (C3HC4-type RING finger) fa...    30   1.2  
At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finger) fa...    29   3.6  
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ...    27   8.4  

>At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 214

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 369 IMIGHTSCTICTRDLKISKCPCPLLATP 452
           I  GHT C +C+R+L +++  CPL   P
Sbjct: 179 IPCGHTFCRVCSRELWLNRGSCPLCNRP 206


>At4g16090.1 68417.m02439 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 251

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 416 NLEVPLSATRDAKNSVYAMNDQTFHTPSFGDKNLIF 523
           N   P    +D+ + +Y+  D+ F+TPSFG   L+F
Sbjct: 165 NFNRPGGTHKDSGSVMYSKRDEKFYTPSFGGHFLVF 200


>At4g13100.2 68417.m02042 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 265

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 369 IMIGHTSCTICTRDLKISKCPCPLLAT 449
           I  GHT C +C+R+L + +  CPL  T
Sbjct: 230 IPCGHTFCRLCSRELWVQRGNCPLCNT 256


>At4g13100.1 68417.m02041 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 304

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 369 IMIGHTSCTICTRDLKISKCPCPLLAT 449
           I  GHT C +C+R+L + +  CPL  T
Sbjct: 269 IPCGHTFCRLCSRELWVQRGNCPLCNT 295


>At3g25030.1 68416.m03128 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 250

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 369 IMIGHTSCTICTRDLKISKCPCPLLAT 449
           I  GHT C +C+R+L + +  CPL  T
Sbjct: 215 IPCGHTFCRLCSRELWVQRGNCPLCNT 241


>At1g62370.1 68414.m07037 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile:  PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 204

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 369 IMIGHTSCTICTRDLKISKCPCPL 440
           I  GHT C +C+R++ +++  CPL
Sbjct: 169 IPCGHTYCRVCSREIWMNRGTCPL 192


>At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 Zinc
           finger, C3HC4 type (RING finger)
          Length = 360

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 378 GHTSCTICTRDLKISKCPCPLLAT 449
           GHT C +C+++L   K  CP+ ++
Sbjct: 328 GHTFCKLCSKELMAQKGHCPVCSS 351


>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 578

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -3

Query: 437 RTGALRDFQVSCTYCTACMTYHDFRKQFVDTPFQFVHRTRKIMTVHL 297
           R GA     +S TY    +    F K+ V++PF+ +H +    ++ L
Sbjct: 90  RCGACGRPTLSATYYACLICEKMFHKECVESPFEIIHPSHPFHSLRL 136


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,946,067
Number of Sequences: 28952
Number of extensions: 308723
Number of successful extensions: 808
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)