Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0098
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32785.1 68417.m04664 expressed protein                             27   8.2  
At4g00570.1 68417.m00080 malate oxidoreductase, putative similar...    27   8.2  

>At4g32785.1 68417.m04664 expressed protein
          Length = 124

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = -1

Query: 323 YYIIXTLQKSILFKAGNQGEYKYVMTRINKIINSLSL 213
           Y+ + T+++ I F+ GN+ E +  +  I +++NSL +
Sbjct: 80  YFGVKTVERVIEFECGNKREKQMWIEGIQQLLNSLEI 116


>At4g00570.1 68417.m00080 malate oxidoreductase, putative similar to
           NAD-dependent malic enzyme 59 kDa isoform, mitochondrial
           precursor (EC 1.1.1.39) (NAD-ME) (SP:P37225) {Solanum
           tuberosum}
          Length = 607

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 432 QPSSKMVLLKIQLLKRLHF*XAFKYYYLVIANIQD 536
           +P + + L K ++L RLH      YY ++I NI+D
Sbjct: 96  EPENVVALAKWRMLNRLHDRNETLYYRVLIDNIKD 130


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,352,749
Number of Sequences: 28952
Number of extensions: 193810
Number of successful extensions: 292
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)