Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0054
         (659 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25480.1 68418.m03032 C-5 cytosine-specific DNA methylase fam...    53   1e-07
At3g52700.1 68416.m05805 hypothetical protein teichoic acid bios...    28   4.8  

>At5g25480.1 68418.m03032 C-5 cytosine-specific DNA methylase family
           protein contains Pfam profile PF00145: C-5
           cytosine-specific DNA methylase
          Length = 383

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 23/42 (54%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
 Frame = +2

Query: 17  YLVPXXMLXK-ANIFDICYADSNRSCCFTKAYTHYVEGTGSV 139
           YLVP  ++ +  N  DI Y DS R CCFTK+Y  YV+GTGS+
Sbjct: 270 YLVPVSLIERWGNAMDIVYPDSKRCCCFTKSYYRYVKGTGSL 311



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 20/46 (43%), Positives = 33/46 (71%)
 Frame = +1

Query: 259 KEILQLMSFPSEYSFPKTVTRKQCYRLLGNSVNVKVISELLQILFD 396
           +E+    SFP ++ FPK ++ +Q Y +LGNS++V V++ LL+ LFD
Sbjct: 337 REVANFHSFPEDFEFPKHISLRQRYAMLGNSLSVAVVAPLLRYLFD 382


>At3g52700.1 68416.m05805 hypothetical protein teichoic acid
           biosynthesis gene TagB, Staphylococcus aureus,
           EMBL:SAU91741
          Length = 196

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 280 SFPSEYSFPKTVTRKQCYRLLGNSVNVKVISELLQILFDE*EYN 411
           +F  E+SF   + R +   LL N+V   V+S+ L  LF   +YN
Sbjct: 108 NFRGEFSFISMMQRIEASLLLINAVKCYVVSDTLGNLFFRNDYN 151


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,775,534
Number of Sequences: 28952
Number of extensions: 205885
Number of successful extensions: 313
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)