Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0039
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g37480.1 68417.m05304 DNAJ heat shock N-terminal domain-conta...    31   0.66 
At5g61700.1 68418.m07741 ABC transporter family protein ABC fami...    29   2.7  
At4g35690.1 68417.m05066 hypothetical protein contains Pfam prof...    28   6.2  
At2g36370.1 68415.m04463 F-box family protein (FBL11) contains s...    28   6.2  
At2g18940.1 68415.m02211 pentatricopeptide (PPR) repeat-containi...    28   6.2  
At1g68670.1 68414.m07846 myb family transcription factor contain...    28   6.2  

>At4g37480.1 68417.m05304 DNAJ heat shock N-terminal
           domain-containing protein low similarity to J-Domain
           (Residues 2-76) In The Escherichia coli N-Terminal
           Fragment (Residues 2-108) Of The Molecular Chaperone
           Dnaj GI:1942570; contains Pfam profile PF00226 DnaJ
           domain
          Length = 523

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +2

Query: 245 LSGLGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNHVVANELKALASLYLKRSYH 424
           +SGLG + +E SCY     G +  + + H +       D   +   L  + +  ++RSYH
Sbjct: 369 ISGLGTIPDEGSCYVYDGNGAKTHVIMKHRTFLVCDLYDLAFLFMYLSQITTYAVERSYH 428


>At5g61700.1 68418.m07741 ABC transporter family protein ABC family
           transporter, Entamoeba histolytica, EMBL:EH058
          Length = 888

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 207 IASNMKVYALIVACLAWVCWPRKTHAIRTSTKDADGL 317
           IAS++ +Y++  +C A   WP     I+T+ K   GL
Sbjct: 177 IASDLPIYSIQPSCSANSTWPLSLGQIQTAVKCVQGL 213


>At4g35690.1 68417.m05066 hypothetical protein contains Pfam profile
           PF03087: Arabidopsis protein of unknown function
          Length = 284

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -3

Query: 284 SMSLPRPAHPSQTGNDESIH 225
           S+SLP  +HPS TG +ES++
Sbjct: 12  SISLPSSSHPSTTGIEESLN 31


>At2g36370.1 68415.m04463 F-box family protein (FBL11) contains
           similarity to leucine-rich repeats containing F-box
           protein FBL3 GI:5919219 from [Homo sapiens]
          Length = 785

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 227 VCSHRCLSGL-GVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNHVVA 376
           VC   C   + G     D+C  +V Q C++  SL  C   Y  F +N ++A
Sbjct: 441 VCESLCYLNIKGCALLSDACIASVIQRCKKLCSLIVC---YTSFSENSILA 488


>At2g18940.1 68415.m02211 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 822

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 499 IGRSWEKTIGLIKHVTKRGGKMD-FSSHTTL 588
           +GRSW K +G++  +  +G K D F+  T L
Sbjct: 258 MGRSWRKILGVLDEMRSKGLKFDEFTCSTVL 288


>At1g68670.1 68414.m07846 myb family transcription factor contains
           Pfam domain, PF00249: Myb-like DNA-binding domain
          Length = 354

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
 Frame = +1

Query: 367 RCSERTEGI-SLTVFETFLPLSPVGLLLQQLPDEQGR--IREALQEIIGR---SWEKTIG 528
           +CSE+T  +    VFE F+P+  +  L +++ +E+      E+  E++      W +++ 
Sbjct: 63  QCSEQTTSVCGGPVFEEFIPIKKISSLCEEVQEEEEEDGEHESSPELVNNKKSDWLRSVQ 122

Query: 529 LIKH 540
           L  H
Sbjct: 123 LWNH 126


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,680,683
Number of Sequences: 28952
Number of extensions: 256704
Number of successful extensions: 701
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)