Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0024
(650 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53240.1 68416.m05868 leucine-rich repeat family protein cont... 35 0.041
At1g68780.1 68414.m07862 leucine-rich repeat family protein cont... 31 0.66
At5g11240.1 68418.m01313 transducin family protein / WD-40 repea... 30 1.2
At3g03710.1 68416.m00375 polyribonucleotide nucleotidyltransfera... 30 1.2
At4g25750.1 68417.m03707 ABC transporter family protein Bactroce... 29 2.0
At5g66330.1 68418.m08363 leucine-rich repeat family protein cont... 29 3.5
At4g38560.1 68417.m05459 expressed protein 29 3.5
At3g62000.1 68416.m06963 O-methyltransferase family 3 protein se... 29 3.5
At4g32810.1 68417.m04667 dioxygenase-related low similarity to b... 28 4.7
At3g04560.1 68416.m00484 expressed protein 28 4.7
At2g25470.1 68415.m03050 leucine-rich repeat family protein cont... 28 4.7
At1g45160.1 68414.m05177 protein kinase family protein contains ... 28 4.7
At3g16750.1 68416.m02138 expressed protein ; expression supporte... 28 6.2
At1g23900.2 68414.m03016 gamma-adaptin, putative similar to SP|O... 28 6.2
At1g23900.1 68414.m03015 gamma-adaptin, putative similar to SP|O... 28 6.2
At5g57710.1 68418.m07214 heat shock protein-related contains sim... 27 8.2
At1g74180.1 68414.m08591 leucine-rich repeat family protein cont... 27 8.2
>At3g53240.1 68416.m05868 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.1
[Lycopersicon pimpinellifolium] gi|1184075|gb|AAC15779
Length = 891
Score = 35.1 bits (77), Expect = 0.041
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Frame = +3
Query: 69 GKFVADIRNNKLSGSEQIAEATLTLVEKIISESNATAR---ELCG-----VLRAAARRIS 224
G + D+RNNKLSG+ + +T ++ ++ E+N T + ELCG +L A R++
Sbjct: 563 GLRLLDLRNNKLSGNIPLFRSTPSISVVLLRENNLTGKIPVELCGLSNVRMLDFAHNRLN 622
Query: 225 SSLP 236
S+P
Sbjct: 623 ESIP 626
>At1g68780.1 68414.m07862 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to disease
resistance protein [Lycopersicon esculentum]
gi|3894383|gb|AAC78591
Length = 432
Score = 31.1 bits (67), Expect = 0.66
Identities = 19/40 (47%), Positives = 29/40 (72%), Gaps = 2/40 (5%)
Frame = +3
Query: 84 DIRNNKLSG--SEQIAEATLTLVEKIISESNATARELCGV 197
D+RNN+LSG S++I E T +LVE ++S +N A +L G+
Sbjct: 273 DLRNNRLSGGLSKEIQEMT-SLVELVLS-NNRLAGDLTGI 310
>At5g11240.1 68418.m01313 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to uncharacterized protein KIAA0007 (GI:1663708)
{Homo sapiens} 1.2e-11
Length = 615
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/79 (27%), Positives = 32/79 (40%)
Frame = -2
Query: 265 PNHVIATSSSGKLELIRRAAARRTPQSSRAVALDSLIIFSTSVSVASAICSEPDNLLFLM 86
P V A SSS K I A + + + F S S++C PD + +
Sbjct: 116 PGGVNAVSSSAKASCIYSGGADGMVCQIDPHSGNLIRKFKASTKTVSSLCVSPDGKILVT 175
Query: 85 SATNLPTVSMCFSLNSISK 29
++T L T + C L I K
Sbjct: 176 ASTQLKTFN-CSDLKKIQK 193
>At3g03710.1 68416.m00375 polyribonucleotide nucleotidyltransferase,
putative similar to polynucleotide phosphorylase
GB:AAC50039 [Pisum sativum], identical to putative
polynucleotide phosphorylase GB:AAF00646 [Arabidopsis
thaliana]
Length = 922
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/65 (32%), Positives = 27/65 (41%)
Frame = -2
Query: 289 IPDGS*NSPNHVIATSSSGKLELIRRAAARRTPQSSRAVALDSLIIFSTSVSVASAICSE 110
+ DGS PNHV G E++ SS D I TSV +A + SE
Sbjct: 77 VGDGSLAFPNHVSVKIPFGNREILVETGLMGRQASSAVTVTDGETIVYTSVCLAD-VPSE 135
Query: 109 PDNLL 95
P + L
Sbjct: 136 PSDFL 140
>At4g25750.1 68417.m03707 ABC transporter family protein Bactrocera
tryoni membrane transporter (white) gene, PID:g3676298
Length = 577
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = -2
Query: 256 VIATSSSGKLELIRRAAARRTPQSSRAVALDSLIIFSTSVSVASAICSEPDNLLFLMSAT 77
+I S +GK L+ AAR +P +S ++ L+S++I +S S+ + D L++ +
Sbjct: 46 IIGPSGAGKSTLLDILAARTSP-TSGSILLNSVLINPSSYRKISSYVPQHDTFFPLLTVS 104
Query: 76 NLPTVSMCFSL-NSISKDS 23
T S L ++SK S
Sbjct: 105 ETFTFSASLLLPKNLSKVS 123
>At5g66330.1 68418.m08363 leucine-rich repeat family protein
contains leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Hcr2-5B
[Lycopersicon esculentum] gi|3894391|gb|AAC78595
Length = 418
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/69 (28%), Positives = 36/69 (52%)
Frame = +3
Query: 87 IRNNKLSGSEQIAEATLTLVEKIISESNATARELCGVLRAAARRISSSLPLELVAIT*LG 266
+ N SGS + ++T++E+++ +SN L G + A+ +SS LE+ G
Sbjct: 135 VSGNSFSGSIPDSVGSMTVLEELVLDSN----RLYGSIPASFNGLSSLKRLEIQLNNISG 190
Query: 267 EF*EPSGMK 293
EF + S +K
Sbjct: 191 EFPDLSSLK 199
>At4g38560.1 68417.m05459 expressed protein
Length = 521
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +1
Query: 280 HQG*KQSFRRPVPEW*GCRRESPRSGSGDSGPAQHRAFNGSGLEGTYKRSHR 435
H+ Q R PE G E PRS + P HR+ +GL+ K R
Sbjct: 167 HRTRNQGPRSKTPEPRGSYLEPPRSRIPQTQPVPHRSLESAGLKSPQKGETR 218
>At3g62000.1 68416.m06963 O-methyltransferase family 3 protein
several O-methyltransferases - different species;
contains Pfam 01596 O-methyltransferase domain
Length = 278
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -2
Query: 517 VAPVRPHVLAGLTRYGRPHCLQLGSXLCDVI--SYRFPQVLIR*RHDAVPGRSRQXQ 353
+AP P+V+A +YG + L L D + + R P++L + R + R Q Q
Sbjct: 45 IAPADPYVVADDDKYGNKQVISLTPRLYDYVLSNVREPKILRQLREETSKMRGSQMQ 101
>At4g32810.1 68417.m04667 dioxygenase-related low similarity to
b,b-carotene-9',10'-dioxygenase [Mus musculus]
GI:12666529; contains Pfam profile PF03055: Retinal
pigment epithelial membrane protein
Length = 570
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 422 RDHIAELRTELETMRXSITSQAREHVRADRCYSRSGPALWSSG 550
R H+A + E +T Q + + Y R+GP LW+ G
Sbjct: 78 RCHVAWTSVQQENWEGELTVQGKIPTWLNGTYLRNGPGLWNIG 120
>At3g04560.1 68416.m00484 expressed protein
Length = 417
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -2
Query: 244 SSSGKLELIRRAAARRTPQSSRAVALDSLIIFSTSVSVASAICSEPDNLL 95
+SS + ++ A + +TP + R+V D +FS + VA + NLL
Sbjct: 141 TSSYFIAILEAAMSSKTPCTDRSVRADYHALFSAAQDVAECLDKSQKNLL 190
>At2g25470.1 68415.m03050 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to disease
resistance protein [Lycopersicon esculentum]
gi|3894383|gb|AAC78591
Length = 910
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +3
Query: 78 VADIRNNKLSGSEQIAEATLTLVEKIISESNATA---RELC 191
+ D+RNNKLSGS + T ++ ++ +N T RELC
Sbjct: 583 ILDLRNNKLSGSIPQFDDTQSINILLLKGNNLTGSIPRELC 623
>At1g45160.1 68414.m05177 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 1067
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 504 RTGATHVRGQRSGRAVLRPTQNRNCKVVVAEGTGR 608
R ++ R + S VL+P NRN K +V G GR
Sbjct: 27 RLASSGPRPEDSSDTVLKPPFNRNQKTIVPRGHGR 61
>At3g16750.1 68416.m02138 expressed protein ; expression supported
by MPSS
Length = 194
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 361 GDSGPAQHRAFNGSGLEGTYKRSHRRAXNRAGDNEXVHN 477
G S + R + L GTY+ H R + + DN+ HN
Sbjct: 100 GVSSTYERRVYKCEQLYGTYRVVHYRRYHMSDDNDYGHN 138
>At1g23900.2 68414.m03016 gamma-adaptin, putative similar to
SP|O43747 Adapter-related protein complex 1 gamma 1
subunit (Gamma-adaptin) (Clathrin assembly protein
complex 1 gamma-1 large chain) {Homo sapiens}; contains
Pfam profiles PF01602: Adaptin N terminal region,
PF02883: Adaptin C-terminal domain
Length = 876
Score = 27.9 bits (59), Expect = 6.2
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Frame = -2
Query: 268 SPNHVIATSSSGKLELIRRAAARRTPQSSRAVALDSLIIF-STSVSVASAICSEPDNLLF 92
+P HV TSS+G +L+ + + +++ A ++ + S+S+ + P NL
Sbjct: 725 APPHVATTSSTGMFDLLDGLSPSPSKEATNGPAYAPIVAYESSSLKIEFTFSKTPGNL-- 782
Query: 91 LMSATNLPTVSMCFSLNSISKDSKXALVP 5
TN+ S N+ + A VP
Sbjct: 783 --QTTNVQATFTNLSPNTFTDFIFQAAVP 809
>At1g23900.1 68414.m03015 gamma-adaptin, putative similar to
SP|O43747 Adapter-related protein complex 1 gamma 1
subunit (Gamma-adaptin) (Clathrin assembly protein
complex 1 gamma-1 large chain) {Homo sapiens}; contains
Pfam profiles PF01602: Adaptin N terminal region,
PF02883: Adaptin C-terminal domain
Length = 876
Score = 27.9 bits (59), Expect = 6.2
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Frame = -2
Query: 268 SPNHVIATSSSGKLELIRRAAARRTPQSSRAVALDSLIIF-STSVSVASAICSEPDNLLF 92
+P HV TSS+G +L+ + + +++ A ++ + S+S+ + P NL
Sbjct: 725 APPHVATTSSTGMFDLLDGLSPSPSKEATNGPAYAPIVAYESSSLKIEFTFSKTPGNL-- 782
Query: 91 LMSATNLPTVSMCFSLNSISKDSKXALVP 5
TN+ S N+ + A VP
Sbjct: 783 --QTTNVQATFTNLSPNTFTDFIFQAAVP 809
>At5g57710.1 68418.m07214 heat shock protein-related contains
similarity to 101 kDa heat shock protein; HSP101
[Triticum aestivum] gi|11561808|gb|AAC83689
Length = 990
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -2
Query: 268 SPNHVIATSSSGKLELIRRAAARRTPQSSRAVALDSL-IIFSTSVSVASAICSEPDN 101
+P HV AT + +RRA R P SS + +L + FS ++ + P N
Sbjct: 36 TPLHVAATLLASPAGFLRRACIRSHPNSSHPLQCRALELCFSVALERLPTATTTPGN 92
>At1g74180.1 68414.m08591 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
esculentum] gi|3894387|gb|AAC78593
Length = 951
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +3
Query: 75 FVADIRNNKLSGSEQIAEATLTLVEKIISESNATA---RELC 191
++ D+RNNKLSGS T ++ ++ +N T R+LC
Sbjct: 624 YILDLRNNKLSGSIPQFVNTGKMITLLLRGNNLTGSIPRKLC 665
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,972,780
Number of Sequences: 28952
Number of extensions: 302937
Number of successful extensions: 967
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -