Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10b07
         (607 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14020.1 68414.m01656 expressed protein contains Pfam PF03138...    29   2.4  
At2g07777.1 68415.m00893 expressed protein                             27   7.3  

>At1g14020.1 68414.m01656 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'growth regulator protein -related'  based on similarity
           to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.
          Length = 499

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 521 QPRIQFQTVRFCAGISQWTLSVCLYVHNNTYTSSVHT 411
           +PR+Q   VR C+ I  WT  V L+     + S + T
Sbjct: 25  KPRVQVWFVRVCSSILVWTCLVQLFAAGELWHSRIFT 61


>At2g07777.1 68415.m00893 expressed protein
          Length = 262

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 549 IALTQTFEHATEDPVSNCTLLRRNF 475
           +AL   +EHA +D   + T+LRRNF
Sbjct: 208 LALHDDWEHAIDDRKRHFTVLRRNF 232


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,337,980
Number of Sequences: 28952
Number of extensions: 236558
Number of successful extensions: 494
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)