Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10b02
         (300 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36280.1 68417.m05159 ATP-binding region, ATPase-like domain-...    26   4.1  
At3g60470.1 68416.m06763 hypothetical protein contains Pfam prof...    26   4.1  
At4g22260.1 68417.m03220 alternative oxidase, putative / immutan...    25   7.1  
At1g26665.2 68414.m03248 expressed protein                             25   9.4  
At1g26665.1 68414.m03247 expressed protein                             25   9.4  
At1g25500.2 68414.m03166 choline transporter-related contains we...    25   9.4  
At1g25500.1 68414.m03167 choline transporter-related contains we...    25   9.4  

>At4g36280.1 68417.m05159 ATP-binding region, ATPase-like
           domain-containing protein low similarity to microrchidia
           [Mus musculus] GI:5410255; contains Pfam profile
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein
          Length = 626

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 29  IIECNNLTKLTVKCNFTKSERSETNSLRLK*ILANLMYINCHLI 160
           ++E N +     K +F +S   +    RLK I+ +  Y +CHL+
Sbjct: 426 VLEANFIEPAHDKQDFERSSLFQRLEARLKKIVYSYWYSHCHLL 469


>At3g60470.1 68416.m06763 hypothetical protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 540

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 106 TTLKVNTCKPNVY*LSSNPQKKVVY*YKFHLKLRNTESY 222
           T L++N   P ++   +NP+ + +Y     L+  N E+Y
Sbjct: 11  TVLELNESTPGMWWFPTNPEHRCIYRVPDRLRRVNPEAY 49


>At4g22260.1 68417.m03220 alternative oxidase, putative / immutans
           protein (IM) identical to IMMUTANS from Arabidopsis
           thaliana [gi:4138855]; contains Pfam profile PF01786
           alternative oxidase
          Length = 351

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -1

Query: 174 YFFLRIR*QLIYIRFASIYFKRSEFVS-ERSDFVKLHFTVSFVKLLHSIII 25
           +F L    ++ Y  F S+      F    R+D++K+HF  S+ ++ H +I+
Sbjct: 132 FFVLETIARVPYFAFMSVLHMYETFGWWRRADYLKVHFAESWNEMHHLLIM 182


>At1g26665.2 68414.m03248 expressed protein
          Length = 189

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +2

Query: 26  IIIECNNLTKLTVKCN 73
           +++E +N+TKL+ KCN
Sbjct: 78  LVMELDNMTKLSEKCN 93


>At1g26665.1 68414.m03247 expressed protein
          Length = 189

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +2

Query: 26  IIIECNNLTKLTVKCN 73
           +++E +N+TKL+ KCN
Sbjct: 78  LVMELDNMTKLSEKCN 93


>At1g25500.2 68414.m03166 choline transporter-related contains weak
           similarity to CD92 protein [Homo sapiens]
           gi|16945323|emb|CAC82175
          Length = 488

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/42 (23%), Positives = 23/42 (54%)
 Frame = -2

Query: 284 LLKTLYFVLIISF*TICYVLIYDSVLRNFK*NLY*YTTFFCG 159
           L+ +L + +  SF +ICY  ++ + +R  +  +  + +  CG
Sbjct: 281 LVDSLRYAVTTSFGSICYGSLFTAAIRTLRWEIRGFRSKICG 322


>At1g25500.1 68414.m03167 choline transporter-related contains weak
           similarity to CD92 protein [Homo sapiens]
           gi|16945323|emb|CAC82175
          Length = 432

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/42 (23%), Positives = 23/42 (54%)
 Frame = -2

Query: 284 LLKTLYFVLIISF*TICYVLIYDSVLRNFK*NLY*YTTFFCG 159
           L+ +L + +  SF +ICY  ++ + +R  +  +  + +  CG
Sbjct: 281 LVDSLRYAVTTSFGSICYGSLFTAAIRTLRWEIRGFRSKICG 322


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,970,157
Number of Sequences: 28952
Number of extensions: 74842
Number of successful extensions: 101
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)