Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10a13
         (758 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44680.1 68418.m05474 methyladenine glycosylase family protei...    33   0.16 
At2g22610.1 68415.m02680 kinesin motor protein-related                 32   0.48 
At5g40250.1 68418.m04883 zinc finger (C3HC4-type RING finger) fa...    31   0.83 
At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB) va...    30   1.5  
At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA) id...    30   1.5  
At1g47900.1 68414.m05334 expressed protein                             30   1.5  
At4g34080.1 68417.m04835 expressed protein contains Pfam profile...    29   4.4  
At4g20230.1 68417.m02956 terpene synthase/cyclase family protein...    29   4.4  
At3g12100.1 68416.m01506 cation efflux family protein / metal to...    29   4.4  
At2g45260.1 68415.m05634 expressed protein contains Pfam profile...    29   4.4  
At1g20100.1 68414.m02515 expressed protein                             28   5.9  
At4g39470.1 68417.m05584 chloroplast lumen common family protein       28   7.7  
At4g21270.1 68417.m03074 kinesin-like protein A (KATA)                 28   7.7  
At3g54610.1 68416.m06042 histone acetyltransferase (GCN5) nearly...    28   7.7  
At1g20530.1 68414.m02558 hypothetical protein                          28   7.7  

>At5g44680.1 68418.m05474 methyladenine glycosylase family protein
           similar to SP|P05100 DNA-3-methyladenine glycosylase I
           (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
           constitutive) {Escherichia coli}; contains Pfam profile
           PF03352: Methyladenine glycosylase
          Length = 353

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
 Frame = +1

Query: 142 RSLKREKKNMQKKYVSLKHSNSMSRKC---ALPEIQPLSAAHLKRTDILLPYKYYLKKQE 312
           + L R      K  +S ++S+   ++     + + QP S A  +R ++ +  +   KK  
Sbjct: 82  KELLRSSSTKSKPVISPENSDGGYKEVMPMVIVQKQPGSIAAARREEVAMKQEERKKKIS 141

Query: 313 HEKRRENFNSNIFEKYKNLSIDLKKRCYVHSPSNEIRTVTDFDKDY 450
           H  R ++  SN  EK  N+  + KKRC   + S++   V   DK++
Sbjct: 142 HYGRIKSVKSN--EKNLNVEHEKKKRCSFITTSSDPIYVAYHDKEW 185


>At2g22610.1 68415.m02680 kinesin motor protein-related 
          Length = 1093

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
 Frame = +1

Query: 499  KSLKYMLNDQSRLKQD-ISFRKDSIFNIEVNHRNEVKTYELALKKYKDVVKNFDTF---I 666
            K++      +SR K + I   +++I N+E  ++    +Y    +K KD+    D+     
Sbjct: 767  KAMVEKARQESRSKDESIKKMEENIQNLEGKNKGRDNSYRSLQEKNKDLQNQLDSVHNQS 826

Query: 667  AKDYQKSMAYLSQCDEIARKVNEKVPEL 750
             K Y +    L   DEI   + +KV EL
Sbjct: 827  EKQYAQLQERLKSRDEICSNLQQKVKEL 854


>At5g40250.1 68418.m04883 zinc finger (C3HC4-type RING finger)
           family protein similar to RING-H2 finger protein RHX1a
           [Arabidopsis thaliana] GI:3790591; contains Pfam profile
           PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 376

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 13/26 (50%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
 Frame = -2

Query: 283 VIIYLFFLN-VLHLMVEFLVKHISST 209
           ++  LFF++ +LHL+V FL+KH S+T
Sbjct: 51  ILAVLFFISGLLHLLVRFLIKHPSAT 76


>At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB)
           various ribosomal L23a proteins
          Length = 154

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +1

Query: 493 HYKSLKYMLNDQSRLKQDISFRKDSIFNIEVNHRNEVKTYELALKKYKDV-VKNFDTFIA 669
           HY+ LKY L  +S +K+ I      +F +++  R + K  + A+KK  D+  K  +T I 
Sbjct: 71  HYQILKYPLTTESAMKK-IEDNNTLVFIVDI--RADKKKIKDAVKKMYDIQTKKVNTLIR 127

Query: 670 KDYQKSMAYL 699
            D  K  AY+
Sbjct: 128 PDGTKK-AYV 136


>At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA)
           identical to GB:AF034694
          Length = 154

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +1

Query: 493 HYKSLKYMLNDQSRLKQDISFRKDSIFNIEVNHRNEVKTYELALKKYKDV-VKNFDTFIA 669
           HY+ LKY L  +S +K+ I      +F +++  R + K  + A+KK  D+  K  +T I 
Sbjct: 71  HYQILKYPLTTESAMKK-IEDNNTLVFIVDI--RADKKKIKDAVKKMYDIQTKKVNTLIR 127

Query: 670 KDYQKSMAYL 699
            D  K  AY+
Sbjct: 128 PDGTKK-AYV 136


>At1g47900.1 68414.m05334 expressed protein
          Length = 1054

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/51 (35%), Positives = 30/51 (58%)
 Frame = +1

Query: 598 EVKTYELALKKYKDVVKNFDTFIAKDYQKSMAYLSQCDEIARKVNEKVPEL 750
           +VKTYE  ++ Y++ VK+F+  I    +K   Y    +E  +K+NE V +L
Sbjct: 72  QVKTYENQVESYEEQVKDFEEQIDAYDEKVHEY----EEQVQKLNEDVEDL 118


>At4g34080.1 68417.m04835 expressed protein contains Pfam profile
           PF04859: Plant protein of unknown function (DUF641
          Length = 331

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 559 KDSIFNIEVNHRNEV-KTYELALKKYKDVVKNFDTFIAKDYQK 684
           +DS    E+  +  + KTYE+ +KK++  ++N D+ I +  QK
Sbjct: 79  QDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEITQMLQK 121


>At4g20230.1 68417.m02956 terpene synthase/cyclase family protein
           vetispiradiene synthase, Hyoscyamus muticus,
           PATX:G763421
          Length = 609

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/70 (22%), Positives = 33/70 (47%)
 Frame = +1

Query: 424 TVTDFDKDYFTNIKHERICKYTHHYKSLKYMLNDQSRLKQDISFRKDSIFNIEVNHRNEV 603
           T+T  DK+     K   + ++TH++ S+   +++   LK++I   K  + N  ++ +   
Sbjct: 54  TLTFDDKERTRKFKKLPLSEWTHYFHSIPLDISEMDALKEEIDELKPKVKNTFMSSQGSD 113

Query: 604 KTYELALKKY 633
            T    L  Y
Sbjct: 114 STKTKILMIY 123


>At3g12100.1 68416.m01506 cation efflux family protein / metal
           tolerance protein, putative member of the cation
           diffusion facilitator (CDF) family, or cation efflux
           (CE) family, PMID:11500563
          Length = 393

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = -2

Query: 322 VFRVLASLNNTCKVIIYLFFLNVLHLMVEFLVKHISST*NLSALNLHIFFACSSSLFS 149
           VF V+ S N   K +  L  LNVL+   E  +   +    L +   H+ F C    FS
Sbjct: 100 VFGVVTSGNRQMKRLFLLIALNVLYSTTELSIGIFTGRVGLVSDAFHLTFGCGLLTFS 157


>At2g45260.1 68415.m05634 expressed protein contains Pfam profile
           PF04859: Plant protein of unknown function (DUF641
          Length = 425

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 559 KDSIFNIEVNHRNEV-KTYELALKKYKDVVKNFDTFIAKDYQK 684
           +DS    E+  +  + KTYE+ +KK++  ++N D+ I +  QK
Sbjct: 103 QDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEITQMLQK 145


>At1g20100.1 68414.m02515 expressed protein
          Length = 285

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +1

Query: 139 ERSLKREKKNMQKKYVSLK----HSNSMSRKCALPEIQPLSAAHL 261
           E+ LK+EKK++++KY + K     S  + + C   E +     +L
Sbjct: 49  EKKLKKEKKSLEQKYSTTKTVSYESEQLEKSCLTEEFEQPQVGYL 93


>At4g39470.1 68417.m05584 chloroplast lumen common family protein
          Length = 341

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 363 KFEHRLEETVLCAQSIKRDPNCYRFR*RLFHEYKTR 470
           KF HR E++++   +  R+PN ++FR R    +  R
Sbjct: 14  KFHHRREQSLIFTPTHLRNPNGFQFRWRKSRPFAPR 49


>At4g21270.1 68417.m03074 kinesin-like protein A (KATA)
          Length = 793

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 469 ERICKYTHHYKSLKYMLNDQSRLKQDISFRKDSIFNIEVNHRNEVK 606
           E +     H KSL+  L+    L+ D   +KDS+ +   N RNE++
Sbjct: 262 ENLSTLRGHSKSLQDQLSSSRVLQDDAIKQKDSLLSEVTNLRNELQ 307


>At3g54610.1 68416.m06042 histone acetyltransferase (GCN5) nearly
           identical to histone acetyltransferase GCN5 [Arabidopsis
           thaliana] GI:13591696; contains Pfam profiles PF00583:
           acetyltransferase, GNAT family, PF00439: Bromodomain
          Length = 568

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +1

Query: 295 YLKKQEHEKRRENFNSNIFEKYKNLSIDLKKRCYVHSPSNEIRTVTDFDKDYFTNIKHER 474
           Y+ ++E  KR E      F  Y N SID    C +   +   R + +  K+Y   +  +R
Sbjct: 201 YIAREEALKREEQAGRLKFVCYSNDSIDEHMMCLIGLKNIFARQLPNMPKEYIVRLLMDR 260


>At1g20530.1 68414.m02558 hypothetical protein
          Length = 614

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 4/127 (3%)
 Frame = +1

Query: 343 NIFEKYK---NLSI-DLKKRCYVHSPSNEIRTVTDFDKDYFTNIKHERICKYTHHYKSLK 510
           N FE Y+      + DLK R    +PS+E        K   T  +++   K     K+L+
Sbjct: 157 NFFESYELPYTTDVNDLKDR--ETTPSHE---EDKLKKKKITVSQNDEKIKVEEEKKTLR 211

Query: 511 YMLNDQSRLKQDISFRKDSIFNIEVNHRNEVKTYELALKKYKDVVKNFDTFIAKDYQKSM 690
               ++ R  ++   +K S    EV  + + + ++ A +   DV K FDT   + YQKS 
Sbjct: 212 ISEKNRKRAPKESKDQKVSSDLSEVTKQLQ-EMFKKASESGNDVSKMFDTSRFRYYQKSS 270

Query: 691 AYLSQCD 711
            Y  QC+
Sbjct: 271 VY--QCN 275


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,439,489
Number of Sequences: 28952
Number of extensions: 253517
Number of successful extensions: 781
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)