Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10a10
         (642 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g37830.1 68417.m05352 cytochrome c oxidase-related contains w...    33   0.12 
At5g02400.1 68418.m00163 protein phosphatase 2C family protein /...    31   0.65 
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co...    31   0.65 
At3g54590.1 68416.m06040 proline-rich extensin-like family prote...    29   3.5  
At1g20130.1 68414.m02518 family II extracellular lipase, putativ...    29   3.5  
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro...    28   4.6  
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro...    28   4.6  
At1g48280.1 68414.m05393 hydroxyproline-rich glycoprotein family...    28   4.6  
At3g58590.1 68416.m06530 pentatricopeptide (PPR) repeat-containi...    28   6.1  
At3g28550.1 68416.m03565 proline-rich extensin-like family prote...    28   6.1  
At5g45350.1 68418.m05567 proline-rich family protein contains pr...    27   8.0  
At4g32640.1 68417.m04646 sec23/sec24 transport protein-related         27   8.0  
At4g16745.1 68417.m02529 exostosin family protein contains Pfam ...    27   8.0  
At1g49750.1 68414.m05579 leucine-rich repeat family protein cont...    27   8.0  

>At4g37830.1 68417.m05352 cytochrome c oxidase-related contains weak
           similarity to cytochrome c oxidase polypeptide
           VIa-liver, mitochondrial precursor (EC 1.9.3.1)
           (Swiss-Prot:P10818) [Rattus norvegicus]
          Length = 102

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +3

Query: 327 KYRNFTYFVLLPLIAIQSFN-ALGHEPPPKGPCRDYEYMRVRTKRFPWG-DGVKSFYHN- 497
           K+   TY  +    A+  +  + GH      P   Y +M +R K FPWG DG+    HN 
Sbjct: 43  KWEKITYLGIASCTALAVYVLSKGHHHGEDPPA--YPHMHIRNKEFPWGPDGLFEVKHNK 100

Query: 498 EH 503
           EH
Sbjct: 101 EH 102


>At5g02400.1 68418.m00163 protein phosphatase 2C family protein /
           PP2C family protein similar to protein phosphatase-2c
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain
          Length = 674

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = +3

Query: 87  PNYN*NMRFNVINKFKRPLIWTVEKARRYSLCGPPRPSKCGCPPKPGSGKVIVP 248
           P+Y  N  +  + K    L+W  EK R     G  +  KC     P SGK   P
Sbjct: 290 PDYLLNNLYTAVQKELNGLLWNDEKLRSLGENGMTKTGKCSDEEDPESGKENCP 343


>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
           contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
           PF04815: Sec23/Sec24 helical domain and PF04810:
           Sec23/Sec24 zinc finger
          Length = 1096

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
 Frame = +3

Query: 183 GPP---RPSKCGCPPKPGSGKVIVPPADCKPGPICYNPCVPRFHHG 311
           GPP   RP   G PP  G G  + PP+    GP+   P     H G
Sbjct: 159 GPPSGARPIGFGSPPPMGPGMSMPPPSGMPGGPLSNGPPPSGMHGG 204


>At3g54590.1 68416.m06040 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 743

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
 Frame = +3

Query: 186 PPRPSKCGCPPKP----GSGKVIVPPADCKPGPICYNPCVPRFH--HGKDTWKKYRNFTY 347
           PP P  C CPP P     S KV+       P P  YN   P ++    K  +K     +Y
Sbjct: 662 PPHPHVCVCPPPPPCYSPSPKVVY---KSPPPPYVYNSPPPPYYSPSPKVYYKSPPPPSY 718

Query: 348 FVLLPLIAIQSFNALGHEPPPK 413
           +   P +  +S     + P PK
Sbjct: 719 YSPSPKVEYKSPPPPSYSPSPK 740


>At1g20130.1 68414.m02518 family II extracellular lipase, putative
           contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
          Length = 1006

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 189 PRPSKCGCPPKPGSGKVIVPPADCKPGP 272
           P PS C  PP     K + PPA C P P
Sbjct: 46  PSPSPCPSPPPKPQPKPVPPPA-CPPTP 72


>At5g54650.2 68418.m06805 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 900

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
 Frame = +3

Query: 174 SLCGPPRPSKCGCPPKPGSGKVIVPP---ADCKPGPICYNPCVPR 299
           S  GPPRP     PP  G  K   PP       P P+   P  PR
Sbjct: 381 SSAGPPRPPPPAPPPGSGGPKPPPPPGPKGPRPPPPMSLGPKAPR 425


>At5g54650.1 68418.m06804 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 900

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
 Frame = +3

Query: 174 SLCGPPRPSKCGCPPKPGSGKVIVPP---ADCKPGPICYNPCVPR 299
           S  GPPRP     PP  G  K   PP       P P+   P  PR
Sbjct: 381 SSAGPPRPPPPAPPPGSGGPKPPPPPGPKGPRPPPPMSLGPKAPR 425


>At1g48280.1 68414.m05393 hydroxyproline-rich glycoprotein family
           protein
          Length = 558

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 117 VINKFKRPLIWTVEKARRYSLCGPPRPSKCGCPPKPGSGKVIVPPA 254
           + +K ++P +   E A   S   PP PS    PP P   K +V PA
Sbjct: 199 IASKLEQPKV-KKEVAVESSRLSPPSPSPSRLPPTPPLPKFLVSPA 243


>At3g58590.1 68416.m06530 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 741

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 228 CQALEDSRICLDVVDHKDCSVWLFQLS 148
           C  LEDSR+C D +  K+   W   LS
Sbjct: 364 CGNLEDSRLCFDYIRDKNIVCWNALLS 390


>At3g28550.1 68416.m03565 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 1018

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = +3

Query: 186 PPRPSKCGCPPKP----GSGKVIVPPADCKPGPICYNPCVPRFH 305
           PP P  C CPP P     S KV+   +   P P  Y+   P +H
Sbjct: 629 PPHPHVCVCPPPPPCYSPSPKVVYKSS---PPPYVYSSPPPPYH 669


>At5g45350.1 68418.m05567 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 177

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 18/41 (43%), Positives = 18/41 (43%)
 Frame = +3

Query: 186 PPRPSKCGCPPKPGSGKVIVPPADCKPGPICYNPCVPRFHH 308
           PP P   G PP PG G    PPA   PG   Y P     HH
Sbjct: 62  PPAPGYGGYPPAPGYGG--YPPA---PGHGGYPPAGYPAHH 97


>At4g32640.1 68417.m04646 sec23/sec24 transport protein-related
          Length = 1069

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +3

Query: 183 GPP---RPSKCGCPPKPGSGKVIVPPADCKPGPI 275
           GPP   RP   G PP  GSG + +PP+    GP+
Sbjct: 161 GPPPGSRPMAFGSPPPVGSG-MSMPPSGMIGGPV 193


>At4g16745.1 68417.m02529 exostosin family protein contains Pfam
           PF03016: Exostosin family
          Length = 542

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 423 RDYEYMRVRTKRFPWGDGVKSFYHNEHVN 509
           R YE M +  K + + DG K  +H  H+N
Sbjct: 191 RSYELMELILKVYIYPDGDKPIFHEPHLN 219


>At1g49750.1 68414.m05579 leucine-rich repeat family protein
           contains leucine-rich repeats, Pfam:PF00560
          Length = 494

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = +3

Query: 186 PPRPSKCGCPPKPGSGKVIVPPADCKPGPICYNPCVPR 299
           PP PS   CPP P S     PP    P P    P  P+
Sbjct: 71  PPPPSPPPCPPPP-SPPPSPPPPQLPPPPQLPPPAPPK 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,206,504
Number of Sequences: 28952
Number of extensions: 324354
Number of successful extensions: 909
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)