Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10a20
         (689 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60480.1 68418.m07585 zinc finger homeobox family protein / Z...    31   0.54 
At5g01240.1 68418.m00031 amino acid permease, putative strong si...    30   1.3  
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc...    30   1.3  
At5g09550.1 68418.m01106 Rab GDP dissociation inhibitor, putativ...    28   5.1  
At3g14350.3 68416.m01816 leucine-rich repeat transmembrane prote...    28   5.1  
At1g13970.1 68414.m01645 expressed protein                             28   5.1  
At1g12280.1 68414.m01420 disease resistance protein (CC-NBS-LRR ...    28   5.1  
At1g24010.1 68414.m03031 expressed protein                             28   6.7  
At1g20330.1 68414.m02537 S-adenosyl-methionine-sterol-C-methyltr...    28   6.7  
At3g20620.1 68416.m02609 F-box family protein-related contains w...    27   8.9  

>At5g60480.1 68418.m07585 zinc finger homeobox family protein /
           ZF-HD homeobox family protein predicted proteins,
           Arabidopsis thaliana
          Length = 191

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +2

Query: 362 PYCRTVLTNPGYMKENFVICIESLHLPDAGDQYNVHELPPEKLKTREVVPI 514
           P   T+LT+P  ++ +   C  + H     D ++ H  PP  L+ + + P+
Sbjct: 29  PKSTTILTDPPSLRCDACGCHRNFHRRSPSDGFSQHRSPPSPLQLQPLAPV 79


>At5g01240.1 68418.m00031 amino acid permease, putative strong
           similarity to AUX1 GI:1531758 from [Arabidopsis
           thaliana]; contains Pfam profile PF01490: Transmembrane
           amino acid transporter protein
          Length = 488

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -3

Query: 540 DGRGSFAMSMGTTSRVFSFSGGSSWTLYWSPASGKCSDSIHITKFSFM*PGFVSTVL 370
           DG G    SM    + F + GGS+W  ++S AS + +  +    +SF   G +S +L
Sbjct: 34  DGNGGNGFSM----KSFLWHGGSAWDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIL 86


>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein weak similarity to
           CARS-Cyp [Homo sapiens]  GI:1117968; contains Pfam
           profile PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 837

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
 Frame = +1

Query: 331 RSTRRSVERLPVL*NSADESRLHERKLRYMYRIAAFTGRRRPIQCPRAAA*ETKDPRGGP 510
           RS+R+SV R P+  +    SR   R  R     +   GRRR  + P  A   +  PR  P
Sbjct: 601 RSSRKSVSRSPIRLSRRSISRSPIRLSRRSISRSPVRGRRRISRSPVPARRRSVRPRSPP 660

Query: 511 ---HRHCER-PPPVGRLQIGDRPDQVQVYEDRPRTA 606
               R   R   P GR++ G    Q   Y  R RT+
Sbjct: 661 PDRRRSLSRSASPNGRIRRGRGFSQRFSYARRYRTS 696


>At5g09550.1 68418.m01106 Rab GDP dissociation inhibitor, putative
           strong similarity to GDP dissociation inhibitor protein
           OsGDI1 [Oryza sativa] GI:2384758; contains Pfam profile
           PF00996: GDP dissociation inhibitor
          Length = 365

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
 Frame = +2

Query: 368 CRTVLTNPGYMKENF--------VICIESLHLPDAGDQYNVHELPPEK 487
           C+ V+ +P Y+ E           +CI S  +PD  D ++V  + P+K
Sbjct: 198 CKKVVCDPSYLSEKVKKVGKVTRAVCIMSHPIPDTNDAHSVQIILPQK 245


>At3g14350.3 68416.m01816 leucine-rich repeat transmembrane protein
           kinase, putative similar to leucine-rich repeat
           transmembrane protein kinase 1 GB:AAC27894 from [Zea
           mays]
          Length = 689

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 213 SKIIHCSVEN-TRLDSTRTRSTIWRPKFRPSSG 308
           SKI H   EN T+LD   ++  IW P+ + + G
Sbjct: 467 SKIAHLDHENVTKLDEEESKPLIWNPRVKIALG 499


>At1g13970.1 68414.m01645 expressed protein
          Length = 504

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +3

Query: 201 RMNRSKIIHCSVENTRLDSTRTRSTIWRPK---FRPSSGYLLRKDLSKYTKKRGT 356
           R   SK++  SV  T +DS  T S     +   +RP +G ++++ L +    +G+
Sbjct: 190 RKKSSKVVMVSVRRTSIDSKSTPSEFSSAEKLLYRPKAGSMIQRSLGEKMTSQGS 244


>At1g12280.1 68414.m01420 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 894

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 465 TLYWSPASGKCSDSIHITK 409
           ++YW P S  C  +IHITK
Sbjct: 815 SIYWQPLSFPCLKTIHITK 833


>At1g24010.1 68414.m03031 expressed protein
          Length = 141

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 401 KENFVICIESLHLPDAGDQYNVHELPPEKLKT 496
           K+ F  CIE++ LP       + E+P EK KT
Sbjct: 18  KKFFQTCIETMDLPKDDVTVEIEEVPLEKKKT 49


>At1g20330.1 68414.m02537
           S-adenosyl-methionine-sterol-C-methyltransferase
           identical to sterol-C-methyltransferase GI:1061040 from
           [Arabidopsis thaliana]
          Length = 361

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +2

Query: 149 AEVSKNETGGGEGIEVIKNEPFKDYPL--LGGKYSSGQYTYKIYHLASKVPAFIRLLAPK 322
           A V   ET    G E++K +     P      +   G+  Y   H+  ++ + + + APK
Sbjct: 260 AYVDIAETAKKVGFEIVKEKDLASPPAEPWWTRLKMGRLAYWRNHIVVQILSAVGV-APK 318

Query: 323 GSLEVHEEAWNAYPY 367
           G+++VHE  +    Y
Sbjct: 319 GTVDVHEMLFKTADY 333


>At3g20620.1 68416.m02609 F-box family protein-related contains weak
           hit to TIGRFAM TIGR01640 : F-box protein interaction
           domain; similar to F-box protein family, AtFBX8
           (GI:20197464) [Arabidopsis thaliana]
          Length = 391

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 113 VEEYQVAQLYCVAEVSKNETGGGEGIEVIKNEPFKDY 223
           V +Y+V +++C  ++   E G  EG  V +   F  Y
Sbjct: 156 VSDYKVYRIFCTGKIIPEERGPAEGFYVQEGRFFTKY 192


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,980,871
Number of Sequences: 28952
Number of extensions: 331422
Number of successful extensions: 1019
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)