Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10a19
(627 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos... 217 7e-57
At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim... 215 2e-56
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil... 215 2e-56
At1g05190.1 68414.m00523 ribosomal protein L6 family protein Sim... 40 0.001
At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6)... 29 3.3
At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identi... 28 5.8
At2g19500.1 68415.m02279 FAD-binding domain-containing protein /... 28 5.8
At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase fa... 27 7.7
>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
ribosomal protein L9, cytosolic - garden pea,
PIR2:S19978
Length = 194
Score = 217 bits (529), Expect = 7e-57
Identities = 102/194 (52%), Positives = 140/194 (72%), Gaps = 5/194 (2%)
Frame = +1
Query: 40 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKV 204
MK I++++ + IPDG+ + V ++++ V+GPRG L R+FKHL +D +++ R LK+
Sbjct: 1 MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60
Query: 205 EKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNF 384
+ WFGS+K A++RT SHV+N+I GVT+GF Y+MR VYAHFPIN N IEIRNF
Sbjct: 61 DSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNF 120
Query: 385 LGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLD 564
LGEK +R+V+M GV +V S K KDE+I+EGN +E VS S ALI Q VK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLD 180
Query: 565 GLYVSEKTTVVLDD 606
G+YVSEK + +++
Sbjct: 181 GIYVSEKGKIAVEE 194
>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
[Arabidopsis thaliana]
Length = 194
Score = 215 bits (525), Expect = 2e-56
Identities = 100/194 (51%), Positives = 142/194 (73%), Gaps = 5/194 (2%)
Frame = +1
Query: 40 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKV 204
MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++ + LK+
Sbjct: 1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60
Query: 205 EKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNF 384
+ WFG++K A++RT SHV+N+I GVT+GF+YKMR VYAHFPIN IEIRNF
Sbjct: 61 DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120
Query: 385 LGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLD 564
LGEK +R+V+M GVT+V S K KDE++++GN +E VS S ALI Q VK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180
Query: 565 GLYVSEKTTVVLDD 606
G+YVSEK+ +V ++
Sbjct: 181 GIYVSEKSKIVEEE 194
>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
thaliana]
Length = 194
Score = 215 bits (525), Expect = 2e-56
Identities = 100/194 (51%), Positives = 142/194 (73%), Gaps = 5/194 (2%)
Frame = +1
Query: 40 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKV 204
MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++ + LK+
Sbjct: 1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60
Query: 205 EKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNF 384
+ WFG++K A++RT SHV+N+I GVT+GF+YKMR VYAHFPIN IEIRNF
Sbjct: 61 DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120
Query: 385 LGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLD 564
LGEK +R+V+M GVT+V S K KDE++++GN +E VS S ALI Q VK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180
Query: 565 GLYVSEKTTVVLDD 606
G+YVSEK+ +V ++
Sbjct: 181 GIYVSEKSKIVEEE 194
>At1g05190.1 68414.m00523 ribosomal protein L6 family protein
Similar to Mycobacterium RlpF (gb|Z84395). ESTs
gb|T75785,gb|R30580,gb|T04698 come from this gene
Length = 223
Score = 39.9 bits (89), Expect = 0.001
Identities = 31/157 (19%), Positives = 70/157 (44%)
Frame = +1
Query: 52 VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKE 231
+ Q + +P +T+ ++ + + VKGP G L + V++ L+V+K +++
Sbjct: 46 IGKQPIAVPSNVTIALEGQDLKVKGPLGELALTYPR-EVELTKEESGFLRVKKTVETRRA 104
Query: 232 LAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRV 411
+ +NM+ GV+KGF+ K+ V + T +G ++ L + V
Sbjct: 105 NQMHGLFRTLTDNMVVGVSKGFEKKLILVGVGYR---ATVDGKELV-----LNLGFSHPV 156
Query: 412 KMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQ 522
KM ++ ++ + + G ++ AA +++
Sbjct: 157 KMQIPDSLKVKVEENTRITVSGYDKSEIGQFAATVRK 193
>At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6) /
caspase family protein similar to latex-abundant protein
[Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
PF00656: ICE-like protease (caspase) p20 domain
Length = 410
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/64 (21%), Positives = 32/64 (50%)
Frame = +1
Query: 13 GSCVKQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPR 192
G + + K +++K+ DG VHV ++ + ++ +LK+N + +++ + P
Sbjct: 188 GIAIPHHKDEKDENKTKELKLEDGAKVHVVNKSLPLQTLIDILKQNTGNNDIEVGKIRPT 247
Query: 193 LLKV 204
L V
Sbjct: 248 LFNV 251
>At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identical
to CLC-d chloride channel protein [Arabidopsis thaliana]
GI:1742959
Length = 792
Score = 27.9 bits (59), Expect = 5.8
Identities = 20/71 (28%), Positives = 35/71 (49%)
Frame = +1
Query: 331 PINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAA 510
P V E S+ ++ N + +R + + P + V + +L+IE N SSA
Sbjct: 706 PSPYVVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVIGLITRKDLLIEENG----ESSAV 761
Query: 511 LIQQSTTVKNK 543
+QQST+V+ +
Sbjct: 762 ELQQSTSVRGR 772
>At2g19500.1 68415.m02279 FAD-binding domain-containing protein /
cytokinin oxidase family protein similar to cytokinin
oxidase, Zea mays [SP|Q9T0N8] [gi:3441978]
Length = 501
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Frame = -2
Query: 476 PSMISS-SFCFGELTTVTPGAI 414
PS+IS+ S FG +TTVTPG +
Sbjct: 39 PSIISAASHDFGNITTVTPGGV 60
>At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1) from {Mus
musculus} SP|P70704, {Bos taurus} SP|Q29449; contains
InterPro accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 1107
Score = 27.5 bits (58), Expect = 7.7
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +1
Query: 388 GEKYIRRVKMAPGVTVVNSPKQKDELI-IEGNSLEDVSSS---AALIQQSTTVKNKDIRK 555
G+K +++A + SP+ K +L+ I+G + EDVS S L + T + KD+
Sbjct: 637 GDKQNTAIQIALSCNFI-SPEPKGQLLMIDGKTEEDVSRSLERVLLTMRITASEPKDVAF 695
Query: 556 FLDG 567
+DG
Sbjct: 696 VIDG 699
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,891,602
Number of Sequences: 28952
Number of extensions: 287159
Number of successful extensions: 775
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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