Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10a12
(635 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con... 157 4e-39
At3g44790.1 68416.m04823 meprin and TRAF homology domain-contain... 33 0.12
At5g38150.1 68418.m04598 expressed protein 30 1.1
At1g61080.1 68414.m06877 proline-rich family protein 30 1.5
At2g46400.1 68415.m05775 WRKY family transcription factor 29 2.6
At3g58220.1 68416.m06491 meprin and TRAF homology domain-contain... 29 3.4
At4g29200.1 68417.m04177 hypothetical protein 28 4.5
At3g58370.1 68416.m06506 K-Cl Co-transporter type 1 protein-rela... 28 4.5
At2g35610.1 68415.m04365 expressed protein 27 7.9
At1g50870.1 68414.m05720 F-box family protein contains Pfam PF00... 27 7.9
>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
contains similarity to 60S acidic ribosomal protein
GI:5815233 from [Homo sapiens]
Length = 235
Score = 157 bits (382), Expect = 4e-39
Identities = 72/168 (42%), Positives = 112/168 (66%), Gaps = 1/168 (0%)
Frame = +1
Query: 130 MPKSKRDKKVSLTKTNKKGLVHKQKVIEEIRNSLSKYEHIFLFTINNMRNTKLKDLRNDW 309
MPKSKRD+ V+L+KT KKG HK+ ++ IR ++ KY +++F+ NMRN K K+ R +
Sbjct: 1 MPKSKRDRPVTLSKTKKKGREHKECIVNGIREAVEKYSSVYVFSFENMRNIKFKEFRQQF 60
Query: 310 K-DSRFFFGKNKVMAIALGKTKSDEIEEQLNLLSKKLKGQCGLLMTNRDVPDVLNWFKSY 486
+ + +FF G NKVM +ALG++ DE+ + +SK L+G GLL+T+ +V + F +Y
Sbjct: 61 RHNGKFFLGSNKVMQVALGRSAEDELRSGIYKVSKLLRGDTGLLVTDMPKEEVESLFNAY 120
Query: 487 QASEYARAGFIATKDVLLPKGPLADFSHTIEPHLRRLGLPTSLEKGVI 630
+ S+++R G IA + V L +GPL F+H +EP LR+L +P L KG +
Sbjct: 121 EDSDFSRTGSIAVETVELKEGPLEQFTHEMEPLLRKLEMPVRLNKGTV 168
>At3g44790.1 68416.m04823 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 324
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 271 MRNTKLKDLRNDWKDSRFFFGKNKVMAIALGKTKSDEIEEQLNLLSKK 414
+R K D + DW + + K K M +GK++ E+EE+L + +K
Sbjct: 233 LRYLKDSDFKVDWLERKLEEVKEKKMEEQIGKSRMQELEEELKIFKQK 280
>At5g38150.1 68418.m04598 expressed protein
Length = 574
Score = 30.3 bits (65), Expect = 1.1
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Frame = +1
Query: 136 KSKRDKKVSLTKTNKKGLVHKQK--VIEEIRNSLSKYEHIFLFTINNMRNTKLKDLRNDW 309
K R+ V + K N K L+ K K V+ +S F+ ++ K+K RN
Sbjct: 305 KILREDDVKIEKLNSKILIEKSKLEVVSIAEERISSLAENFVGSLE-----KIKKSRNAA 359
Query: 310 KDSRFFFGKNKVMAIA-LGKTKSDEIEEQLNLLSK 411
K F F + K + A KTK D +++ L SK
Sbjct: 360 KKEEFLFKEEKTVTKAETQKTKLDIDKKESELNSK 394
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 29.9 bits (64), Expect = 1.5
Identities = 31/145 (21%), Positives = 62/145 (42%), Gaps = 3/145 (2%)
Frame = +1
Query: 187 LVHKQKVIEEIRNSLSKY-EHIFLFTINNMRNTKLKDLRNDWKDSRFFFGKNKVMAIALG 363
++H ++E R ++ K +H F LK + + W D+ + K+K + ++G
Sbjct: 149 IIHSSHIMEIRRANVDKVLDHFF---------NALKSIGDSWIDNPEWIAKSKYWSSSVG 199
Query: 364 KTKSDEIEEQLNLLSKKLKGQCGLLMTNRDVPDVLNWFKSYQASEYA--RAGFIATKDVL 537
K +SD L+ K L GL+ +++ D++ + + E + G ++ VL
Sbjct: 200 KNQSD------RLVEKVLAALDGLIKMSKERFDMMEIDEEEEKKESTSPQTGKTSSSRVL 253
Query: 538 LPKGPLADFSHTIEPHLRRLGLPTS 612
P +D + G PT+
Sbjct: 254 SPSESFSDSKSSFGSRNSFCGSPTT 278
>At2g46400.1 68415.m05775 WRKY family transcription factor
Length = 295
Score = 29.1 bits (62), Expect = 2.6
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +1
Query: 217 IRNSLSKYEH-IFLFTINNMRNTKLKDLRNDWKDSRFFFGKNKVMAIALGKTKSDEIEEQ 393
I + L Y++ IF+ + N +N + L D KDS+ F K KV K K EQ
Sbjct: 39 ISDILRIYQNAIFMLSFNQDKNILKRSLEIDGKDSKNVFKKRKVSEKNTEKVKVFVATEQ 98
Query: 394 LN 399
N
Sbjct: 99 EN 100
>At3g58220.1 68416.m06491 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 487
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 304 DWKDSRFFFGKNKVMAIALGKTKSDEIEEQLNLLSKKLKGQCGLL 438
DW D + K K + GKT+ E+EE+L +K + LL
Sbjct: 423 DWLDKKLKEVKEKKVVEQTGKTRIQELEEELKEFKQKCLDREALL 467
>At4g29200.1 68417.m04177 hypothetical protein
Length = 457
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -1
Query: 320 LESFQSFRRSFNFVFLMLLMVNKNMCSYLLSEFLISSMTFC 198
L++ F+ S +F+FL +++ N C+ L+ EFL S C
Sbjct: 414 LKALMEFK-SMHFIFLFMVLGNTVCCNALIFEFLNSISCNC 453
>At3g58370.1 68416.m06506 K-Cl Co-transporter type 1 protein-related
/ KCC1 protein-related contains weak hit to Pfam profile
PF03522: K-Cl Co-transporter type 1 (KCC1)
Length = 219
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 295 LRNDWKDSRFFFGKNKVMAIALGKTKSDEIEEQLNLLSKK-LKGQCGLLMTNRDVPD 462
LR DW + + K K + GK + EE+L L++K L+ + L N DV +
Sbjct: 152 LRLDWLEKKLAEVKAKKKKVETGKARLQRAEEELQKLNQKCLELKAFLEKENADVSE 208
>At2g35610.1 68415.m04365 expressed protein
Length = 644
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +1
Query: 484 YQASEY--ARAGFIATKDVLLPKGPLADFSHTIEPH 585
Y EY + GFIA K + PK L D HTIE H
Sbjct: 390 YDPPEYYDSPGGFIAFKPSI-PKSLLLDGKHTIESH 424
>At1g50870.1 68414.m05720 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain; similar to Probable
disease resistance RPP8-like protein 2
(Swiss-Prot:Q9MAG6) [Arabidopsis thaliana]
Length = 396
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +3
Query: 165 YKNQQKRFSTQTKSHRRNKKFTEQI*THIFVYHQ*HEKY 281
+KN+ K F H +N K T H+ YH + KY
Sbjct: 85 FKNKDKLFVFTFPHHNQNSKETHSYSQHVDSYHIKYPKY 123
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,198,760
Number of Sequences: 28952
Number of extensions: 267212
Number of successful extensions: 728
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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