Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10a03
         (390 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03850.1 68418.m00356 40S ribosomal protein S28 (RPS28B) ribo...    66   6e-12
At3g10090.1 68416.m01209 40S ribosomal protein S28 (RPS28A) simi...    66   6e-12
At5g64140.1 68418.m08054 40S ribosomal protein S28 (RPS28C)            65   1e-11
At4g35500.2 68417.m05045 protein kinase family protein contains ...    29   1.5  
At4g35500.1 68417.m05044 protein kinase family protein contains ...    29   1.5  
At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containi...    27   3.4  
At2g43890.1 68415.m05456 polygalacturonase, putative / pectinase...    27   5.9  

>At5g03850.1 68418.m00356 40S ribosomal protein S28 (RPS28B)
           ribosomal protein S28, Arabidopsis thaliana,
           EMBL:ATRP28A
          Length = 64

 Score = 66.5 bits (155), Expect = 6e-12
 Identities = 34/53 (64%), Positives = 42/53 (79%)
 Frame = +2

Query: 53  MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 211
           MD     A VVKV+GRTGS+GQ TQV+V+F  ++ R I+RNVKGPVR+GDILT
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFT-DSDRYIMRNVKGPVREGDILT 52


>At3g10090.1 68416.m01209 40S ribosomal protein S28 (RPS28A) similar
           to ribosomal protein S28 GB:P34789 [Arabidopsis
           thaliana]
          Length = 64

 Score = 66.5 bits (155), Expect = 6e-12
 Identities = 34/53 (64%), Positives = 42/53 (79%)
 Frame = +2

Query: 53  MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 211
           MD     A VVKV+GRTGS+GQ TQV+V+F  ++ R I+RNVKGPVR+GDILT
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFT-DSDRYIMRNVKGPVREGDILT 52


>At5g64140.1 68418.m08054 40S ribosomal protein S28 (RPS28C)
          Length = 64

 Score = 65.3 bits (152), Expect = 1e-11
 Identities = 33/53 (62%), Positives = 42/53 (79%)
 Frame = +2

Query: 53  MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 211
           MD     A VVKV+GRTGS+GQ TQV+V+F  ++ R I+RNVKGPVR+GD+LT
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFT-DSDRFIMRNVKGPVREGDVLT 52


>At4g35500.2 68417.m05045 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 439

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +2

Query: 29  LSSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIR 172
           LS+     +DK   + R++     +G  GQ   + +EF+G++  ++IR
Sbjct: 87  LSAAADGDLDKTKCVVRLIDHFKHSGPNGQHLCMVLEFLGDSLLRLIR 134


>At4g35500.1 68417.m05044 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 438

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +2

Query: 29  LSSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIR 172
           LS+     +DK   + R++     +G  GQ   + +EF+G++  ++IR
Sbjct: 86  LSAAADGDLDKTKCVVRLIDHFKHSGPNGQHLCMVLEFLGDSLLRLIR 133


>At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 867

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -3

Query: 244 QPPSFTFRFKKSEDVSVTDRSFHVPDDLTAGLPNELDLHLSTLALRTSTA 95
           +PP F  RF   + +S   R  H PD+ +  + +     +STL     T+
Sbjct: 11  RPPIFLHRFINPKPISSQTRFLHPPDNQSRDISDSTTETISTLEFPHKTS 60


>At2g43890.1 68415.m05456 polygalacturonase, putative / pectinase,
           putative similar to SP|P48979 Polygalacturonase
           precursor (EC 3.2.1.15) (PG) (Pectinase) {Prunus
           persica}; contains Pfam profile PF00295: Glycosyl
           hydrolases family 28 (polygalacturonases)
          Length = 392

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 211 SEDVSVTDRSFHVPDDLTAGLPNELDLHLSTL 116
           S  V+VTD +FH  DD  +  P   +L++S L
Sbjct: 204 SAGVTVTDGTFHTGDDCISIGPGTRNLYMSKL 235


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,103,167
Number of Sequences: 28952
Number of extensions: 147063
Number of successful extensions: 363
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 557595584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)